Plant FIBer expression Database

Lus10036528 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041400
[exp]
381 / 1e-134 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G040200
[exp]
113 / 3e-30 ND /
PFAM info
Representative CDS sequence
>Lus10036528 pacid=23174594 polypeptide=Lus10036528 locus=Lus10036528.g ID=Lus10036528.BGIv1.0 annot-version=v1.0
ATGAAACCCAAGATCCCCAACGCAAAACCATCCTCGTCGTTACTGAAGCGGCAAATCAGGAACCCTGAAGTGTACAGAGAAGCCATAGTCCTATGCATGG
AGATCATCATCCTACTGGGATTCCACCTCCTCTTCTATACAACCCTCCTCATCCTCCAACAGCTCTTCTCCTCCGCCGCCCTCCTCCTCCTCCCCGTCTC
CGTAGCCGCCGTCTTCACCATCGGAACCACTGTCGGAAGCTTCCCCATCGCCGTCCTCCGCAAGCTCATGCGCACTAGGGAGAGGCTTGGCGACGCCGTC
ACCTACGCCATCGACAACATGCACGAGAGGGCACGTCAGGATCACGCCTTTGATCTTTTCGATATCGACCGTGACGGTGGTATCGATGATGATGCCAAGT
CGCCTAAGATCGTCGCCATGTGGACGAGTTTCGCCGCCTACGTGGGCCTCTTAGCTCAGATCGTTCTCCGGTATCCTTTCTCGGCCGACACTTTTTTCGC
GGGTGGGATGATCGCCATCGCCATTGTTGCTAATCTCGTCACCTACTTCTCCTTCTTTTGGAATGCCGCTGCCCGTCACAAGGAGATTGAAGAATTGGAG
GAAGTGAAGAGTAAGTTCAGAGAAGAGAGAGGAAAGTGGGAAGAAGAGAAGAGAAATCTAAGGGAAGAGTTGGTTAGGGCAAAGCATGGAGCTGATTATC
AACAATCACAAAGGCCTTCTTCTCCACCAATTCCTAGACCTTTAGGCAGGGCCAATTCTGGTCCTGTTAGTTTAGCTTCTTACACCATGTTTGGAAATTT
TGATTGGGATTAA
AA sequence
>Lus10036528 pacid=23174594 polypeptide=Lus10036528 locus=Lus10036528.g ID=Lus10036528.BGIv1.0 annot-version=v1.0
MKPKIPNAKPSSSLLKRQIRNPEVYREAIVLCMEIIILLGFHLLFYTTLLILQQLFSSAALLLLPVSVAAVFTIGTTVGSFPIAVLRKLMRTRERLGDAV
TYAIDNMHERARQDHAFDLFDIDRDGGIDDDAKSPKIVAMWTSFAAYVGLLAQIVLRYPFSADTFFAGGMIAIAIVANLVTYFSFFWNAAARHKEIEELE
EVKSKFREERGKWEEEKRNLREELVRAKHGADYQQSQRPSSPPIPRPLGRANSGPVSLASYTMFGNFDWD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10036528
[exp]
0 1
AT3G23110 EMB2800, AtRLP3... EMBRYO DEFECTIVE 2800, recepto... Lus10024721
[exp]
4.0 0.8665
AT3G54700 PHT1;7 phosphate transporter 1;7 (.1) Lus10003560
[exp]
5.3 0.8651
AT3G05670 RING/U-box protein (.1) Lus10031468
[exp]
9.5 0.7816
AT3G47420 AtG3Pp1, ATPS3 Glycerol-3-phosphate permease ... Lus10027211
[exp]
10.2 0.8085
AT2G46520 cellular apoptosis susceptibil... Lus10030433
[exp]
16.4 0.7072
AT1G01470 LSR3, LEA14 LIGHT STRESS-REGULATED 3, LATE... Lus10036402
[exp]
21.8 0.8109
AT1G17870 ATEGY3 ethylene-dependent gravitropis... Lus10006140
[exp]
26.8 0.8016
AT3G47420 AtG3Pp1, ATPS3 Glycerol-3-phosphate permease ... Lus10038923
[exp]
30.7 0.7811
AT3G02040 AtGDPD1, SRG3 Glycerophosphodiester phosphod... Lus10041535
[exp]
31.6 0.7544
AT3G43110 unknown protein Lus10020796
[exp]
32.7 0.7570

Lus10036528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.