Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14990 176 / 5e-49 unknown protein AT2G34730 64 / 1e-10 myosin heavy chain-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023264 [exp] 67 / 2e-11 AT2G34730 361 / 1e-111 myosin heavy chain-related (.1.2) Lus10038540 [exp] 67 / 2e-11 AT2G34730 360 / 2e-111 myosin heavy chain-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G222200 [exp] 242 / 6e-71 AT5G14990 211 / 2e-58 unknown protein Potri.011G164400 [exp] 62 / 4e-10 AT2G34730 432 / 2e-138 myosin heavy chain-related (.1.2) Potri.001G466800 [exp] 55 / 1e-07 AT2G34730 390 / 7e-123 myosin heavy chain-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036529 pacid=23174506 polypeptide=Lus10036529 locus=Lus10036529.g ID=Lus10036529.BGIv1.0 annot-version=v1.0 ATGGATGGGATCGTTGGTAAGGTGGGAGGGAGGTTCAGAATCTCGCTAACAGAGTCGACAATGATGAAGATCCTCCACTCTGCCATGGACAAATCGCACG AGCGAGTCAAGTCCGAAGAAGGCGTGATCCTCCGGTTAACAGAGATATCAAAGTTCTACGAGCTGGCCGTAATGCTTCTAGACGGCTGTCTTCGTTTCGT TCATGACGAAGCAGACAGCAATGCCATGGAGGAGGAGAATGTCGTGGGCGAATTAGCCGAGATCAGGGACCGTCTCCGAGGCCGGCTTAGAGAGACGGAA CTCGCCATTGCGGAGAAGGACAGCGAGTTCCGGCGTAGGTTTGGGGACGGGGACGAATCGCCGGATTTGAAGCGGTTCGATTCGTTAGGTGTGGATTTCA GGCTGGAGAAGCTGAAGGGAGATGGGAATTCGGAGGAAGAGTTCTCGGAGCTTCAGCATTCGGTGGATCAGCAGGTGATGAACATTAAACAGAAGCTAGG GCCGGAGTACAAGATGGTGGAGAAGAGGAGGAACAAGAGCCTTGATTGCTTGAAGATCGATCAAATGAGCTCCGACATTGACATCTTGAAAGGGACGATG GATCTCGCGTTTGGAAAGATGCATAGTGCTATTTCCCTTGCCGAGTCTGAGAAGCGAGGTGAGCAGCAGTGGGGTTGGGAGGTTGAGAGACGCACAACGG CTGTTCTCATGCGAGGAATTGTGGAGGATTCGGAGGAGAGGTATGTTTCGGAACTTAATCGGAGAGAAGAACTAGTTACTGAAATTGATATGCTGCGAAA TGGGAAGGAAGACTTGCAGTTCCAGATTGCAACGATGGAGAACACTTATCTTGCTATTATACAAGGATTGTTAAATGATCATGACGTCGAAATCGAGATG AGCAAAGGGATTGTCAATGAGATTGTTAGAAGATCAGTCCATGAGTGGAGGCAGAAGCTAGGAATGCAAAGAATTGAAGCTCAAATCAGGGAAGGCGTTT ACAGCGAATCGTTGAAAGAGATGGCGTCTAGTTTGCAATTTTCACTGCTGGAATGTCAGGATGTCAGTAATGAATGTAAATTGTATGCAGAAGCTTTCAA TAGGCGCTGCGAGAATCTCAGAAAGGCTGAAATCGAGGTTGATCTGCTGGGAGATCAGGTGGATGCACTCTTGGGACTGCTTGAGAAGATATATCAAATC CTGTACCATTATGCACCTACCCTGCAACAACATTTTGAGGTGAGGCCTGCAGCTTCATATTCCTGCCTTGTTGATCTGGAATTTCTGCTTCTTACTGGCA CTTGTTCTGTGCTCTCAAGGTCTGGGACATTCTTCTGA
AA sequence Show only first row Show all	>Lus10036529 pacid=23174506 polypeptide=Lus10036529 locus=Lus10036529.g ID=Lus10036529.BGIv1.0 annot-version=v1.0 MDGIVGKVGGRFRISLTESTMMKILHSAMDKSHERVKSEEGVILRLTEISKFYELAVMLLDGCLRFVHDEADSNAMEEENVVGELAEIRDRLRGRLRETE LAIAEKDSEFRRRFGDGDESPDLKRFDSLGVDFRLEKLKGDGNSEEEFSELQHSVDQQVMNIKQKLGPEYKMVEKRRNKSLDCLKIDQMSSDIDILKGTM DLAFGKMHSAISLAESEKRGEQQWGWEVERRTTAVLMRGIVEDSEERYVSELNRREELVTEIDMLRNGKEDLQFQIATMENTYLAIIQGLLNDHDVEIEM SKGIVNEIVRRSVHEWRQKLGMQRIEAQIREGVYSESLKEMASSLQFSLLECQDVSNECKLYAEAFNRRCENLRKAEIEVDLLGDQVDALLGLLEKIYQI LYHYAPTLQQHFEVRPAASYSCLVDLEFLLLTGTCSVLSRSGTFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14990			unknown protein		Lus10036529 [exp]	0	1
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10035055 [exp]	4.0	0.8700
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10042550 [exp]	6.1	0.8819
AT5G42120			Concanavalin A-like lectin pro...		Lus10029769 [exp]	8.1	0.8553
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	11.4	0.8723
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	14.5	0.8597
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002775 [exp]	14.8	0.8701
AT3G56570			SET domain-containing protein ...		Lus10029539 [exp]	19.4	0.8653
					Lus10032472 [exp]	20.6	0.8624
AT2G45010			PLAC8 family protein (.1.2)		Lus10042885 [exp]	24.8	0.8575
AT3G47570			Leucine-rich repeat protein ki...		Lus10030852 [exp]	24.8	0.8465

Compare expression of checked genes

Lus10036529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.