Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19290 481 / 3e-172 alpha/beta-Hydrolases superfamily protein (.1) AT5G14980 439 / 1e-155 alpha/beta-Hydrolases superfamily protein (.1) AT1G11090 218 / 9e-69 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 192 / 1e-58 alpha/beta-Hydrolases superfamily protein (.1) AT1G77420 191 / 8e-58 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 189 / 2e-57 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 188 / 2e-57 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39420 183 / 2e-55 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 181 / 9e-55 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 180 / 2e-54 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041399 [exp] 573 / 0 AT5G19290 464 / 7e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 201 / 5e-62 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10011212 [exp] 196 / 2e-60 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 191 / 1e-58 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 186 / 9e-56 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 187 / 2e-54 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10034331 [exp] 182 / 3e-54 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1) Lus10041441 [exp] 180 / 2e-53 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Lus10018466 [exp] 171 / 1e-51 AT1G11090 382 / 1e-134 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G040000 [exp] 516 / 0 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G222300 [exp] 515 / 0 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466700 [exp] 320 / 7e-109 AT5G14980 346 / 6e-119 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G046500 [exp] 215 / 1e-67 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 196 / 1e-60 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 194 / 6e-59 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G212200 [exp] 188 / 2e-57 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G124000 [exp] 184 / 6e-55 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 182 / 9e-55 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 182 / 1e-54 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Lus10036530 pacid=23174586 polypeptide=Lus10036530 locus=Lus10036530.g ID=Lus10036530.BGIv1.0 annot-version=v1.0 ATGGCGGAGGTCGCCGTCCAGCATCCAATTTCCGACGCCGACGAAAAAACTCCTTTCGGAACCCTCTCCCCGGAGGAATTCTACGCCAAACACGGCGTCT CCCATCACAAAGAGTACCGAACTAATTCACGCGGCTTCAAGCTTTTCACCCAGTGGTGGACCCCACTCCCTCCTGCCGAAAATATCGGGTGCGTCGCCGT CGTCCACGGTTACACCGGCGAGTCCAGCTGGTTTCTCCAGCTCACCTCCATCCTCTTCGCCAAGCACGGCTTCCTTGTCTGCGCAATCGACCACCAGGGC CACGGCTTCTCTGACGCCCTTGACGGCTTAATCCACCACATGCCCGATATCAACCCCGTCGTCGACGATTGCATCGATTTCTTCAACGAATTCCGCGAGA CTCACGCTCGCAATCTCCCGGCGTTCCTCTACGCGGAGTCCCTGGGTGGCGCCATCGCATTGTACATCTCGCTCAAGCAGAAAGGCGAGTGGGACGGGCT CATCTTGAACGGTGCCATGTGCGGGATCAGCGCCAAGATCAAGCCTCCATGGCCGCTGGAGCACCTTCTGTTCATAGTGGCCGCTGTAATCCCTACTTGG CGCGTTGTCCCCACCCGCGGGACAATCCCTGACGTTTCTTTCAAGGAGGAGTGGAAGCGGAGGTTGGCTATGGCCAGCCCGAGGCGGAGCGTGGCCAGAC CACGCGCGGCAACAGCTCTGGAGCTGCTGAGAGTTTGCAGGGATTTGCAAGGGAGATTCGAGGAAGTGGATGTCCCGCTGCTGATCTCTCACGGCGGCGA TGACGTGGTGTGCGACCCTGCTTGCGTTGAAGAGCTTCACCGACGCGCCTCCAGCAAGGACAAGACTTTGAAGATATACCCAGGGATGTGGCACCAGATG GTTGGCGAGGAGCAGGATAATGTTAATTTAGTGTTTGGTGATATGATCTCTTGGTTGAAAGCCCGTGCCCAACGCGCCATCGGAAACTGA
AA sequence Show only first row Show all	>Lus10036530 pacid=23174586 polypeptide=Lus10036530 locus=Lus10036530.g ID=Lus10036530.BGIv1.0 annot-version=v1.0 MAEVAVQHPISDADEKTPFGTLSPEEFYAKHGVSHHKEYRTNSRGFKLFTQWWTPLPPAENIGCVAVVHGYTGESSWFLQLTSILFAKHGFLVCAIDHQG HGFSDALDGLIHHMPDINPVVDDCIDFFNEFRETHARNLPAFLYAESLGGAIALYISLKQKGEWDGLILNGAMCGISAKIKPPWPLEHLLFIVAAVIPTW RVVPTRGTIPDVSFKEEWKRRLAMASPRRSVARPRAATALELLRVCRDLQGRFEEVDVPLLISHGGDDVVCDPACVEELHRRASSKDKTLKIYPGMWHQM VGEEQDNVNLVFGDMISWLKARAQRAIGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10036530 [exp]	0	1
AT1G16850			unknown protein		Lus10035730 [exp]	3.5	0.7735
AT5G43140			Peroxisomal membrane 22 kDa (M...		Lus10007761 [exp]	5.1	0.7877
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10004573 [exp]	11.6	0.7761
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10001008 [exp]	15.0	0.7626
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014327 [exp]	20.1	0.7625
AT5G27990			Pre-rRNA-processing protein TS...		Lus10006795 [exp]	25.0	0.7483
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	27.6	0.7569
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	35.0	0.7591
AT3G29575		AFP3	ABI five binding protein 3 (.1...		Lus10022764 [exp]	36.9	0.6756
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Lus10025165 [exp]	37.5	0.7459

Compare expression of checked genes

Lus10036530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.