Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37180 139 / 2e-41 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT2G37170 139 / 4e-41 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT3G53420 139 / 6e-41 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) AT4G35100 136 / 3e-40 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT2G16850 135 / 8e-40 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT3G54820 133 / 9e-39 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) AT5G60660 132 / 1e-38 PIP2F, PIP2;4 plasma membrane intrinsic protein 2;4 (.1) AT2G39010 131 / 4e-38 PIP2E, PIP2;6 PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, plasma membrane intrinsic protein 2E (.1) AT1G01620 110 / 6e-31 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT4G23400 111 / 2e-30 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015083 [exp] 139 / 1e-42 AT5G60660 290 / 2e-100 plasma membrane intrinsic protein 2;4 (.1) Lus10026504 [exp] 138 / 9e-42 AT5G60660 358 / 1e-126 plasma membrane intrinsic protein 2;4 (.1) Lus10022577 [exp] 137 / 2e-41 AT4G00430 248 / 3e-83 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10021475 [exp] 137 / 9e-41 AT2G39010 265 / 4e-89 PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, plasma membrane intrinsic protein 2E (.1) Lus10019934 [exp] 137 / 1e-40 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10023184 [exp] 136 / 4e-40 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10027467 [exp] 136 / 4e-40 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10014978 [exp] 136 / 5e-40 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10039222 [exp] 136 / 5e-40 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G128000 [exp] 142 / 3e-42 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.009G013900 [exp] 141 / 4e-42 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128200 [exp] 140 / 1e-41 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.016G089500 [exp] 140 / 2e-41 AT2G37180 458 / 1e-164 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) Potri.004G176300 [exp] 139 / 4e-41 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.009G136600 [exp] 139 / 4e-41 AT4G35100 493 / 1e-178 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.010G222700 [exp] 137 / 2e-40 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.008G039600 [exp] 133 / 5e-39 AT3G53420 445 / 1e-159 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Potri.005G109300 [exp] 120 / 6e-34 AT2G16850 413 / 4e-147 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Potri.010G191900 [exp] 114 / 2e-31 AT4G00430 509 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10036531 pacid=23174361 polypeptide=Lus10036531 locus=Lus10036531.g ID=Lus10036531.BGIv1.0 annot-version=v1.0 ATGCTTAGGAGCAATCTGTGGGGTGGGATTAGTGAAGGCTTTTCAGAAGTCCCACTAGGGCTTTGCAGAAGCCCCACTACCCCAGGTACGGCGGTGGAGC CAACTCCCTTAGCACCGACTACAGCACCGGCACCGGAGTTGGTGCGGAGATCATCGGCACTTTCGTTTTGGTGTATACAGTTTTCTCCGCCACCGATCCC AAGAGAAGCGCTCGTATTAGCGCCACTGCCAATTGGATTTGCAGTGTTCATGGTTCATTTGGCTACCATTCCGATCACGGGCACTGGTATCAACCCAGCG AGGAGTTTCGGAGCTGCTGTCATCTTCAACGAGTCGAAGCCATGGGATGACCATTGGATCTTCTGGGTTGGACCATTCGCGGGAGCAGCTCTGGCGGCAT TCTTTCACCAGTTCATATTGAGAGCAGGAGCTGTCAAGGCACTTGGGTCCTTCAGGAGCAGCGCAAGTGCTGTATAA
AA sequence Show only first row Show all	>Lus10036531 pacid=23174361 polypeptide=Lus10036531 locus=Lus10036531.g ID=Lus10036531.BGIv1.0 annot-version=v1.0 MLRSNLWGGISEGFSEVPLGLCRSPTTPGTAVEPTPLAPTTAPAPELVRRSSALSFWCIQFSPPPIPREALVLAPLPIGFAVFMVHLATIPITGTGINPA RSFGAAVIFNESKPWDDHWIFWVGPFAGAALAAFFHQFILRAGAVKALGSFRSSASAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53420		PIP2;1, PIP2A	PLASMA MEMBRANE INTRINSIC PROT...		Lus10036531 [exp]	0	1
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10039231 [exp]	2.4	0.9275
AT2G04480			unknown protein		Lus10032584 [exp]	6.2	0.9241
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014677 [exp]	6.7	0.9343
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Lus10018726 [exp]	8.5	0.9186
AT3G07080			EamA-like transporter family (...		Lus10022798 [exp]	11.5	0.8895
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10014358 [exp]	14.9	0.9010
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Lus10039132 [exp]	16.1	0.9053
AT2G33850			unknown protein		Lus10015406 [exp]	16.3	0.8771
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	17.1	0.9238
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10008913 [exp]	19.4	0.9198

Compare expression of checked genes

Lus10036531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.