Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61050 591 / 0 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G61030 329 / 5e-107 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 326 / 1e-104 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT5G11100 280 / 2e-87 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 277 / 2e-86 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G04220 198 / 9e-57 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G20080 192 / 9e-55 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G20990 168 / 7e-46 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G53590 72 / 3e-13 NTMCTYPE6.1 ,NTMC2T6.1 ,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G19830 70 / 2e-12 NTMCTYPE5.2 ,NTMC2T5.2 ,NTMC2TYPE5.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041396 [exp] 776 / 0 AT3G61050 676 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10038117 [exp] 279 / 4e-87 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008055 [exp] 278 / 4e-87 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041034 [exp] 255 / 2e-78 AT5G11100 710 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10006193 [exp] 253 / 3e-77 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10039979 [exp] 214 / 3e-64 AT5G11100 379 / 2e-127 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10017268 [exp] 205 / 2e-59 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10013563 [exp] 204 / 1e-58 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10040414 [exp] 200 / 3e-57 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G072800 [exp] 672 / 0 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G150700 [exp] 660 / 0 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.006G063900 [exp] 282 / 2e-88 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 279 / 3e-87 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 260 / 8e-80 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.005G241700 [exp] 203 / 1e-58 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G038300 [exp] 199 / 4e-57 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 199 / 5e-57 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.009G134200 [exp] 192 / 1e-54 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.002G019800 [exp] 192 / 2e-54 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10036532 pacid=23174609 polypeptide=Lus10036532 locus=Lus10036532.g ID=Lus10036532.BGIv1.0 annot-version=v1.0 ATGCATGTTAGCTGTTCGAGTGTCTTGTTTGAGATTGTGGAGTTATTTTTTTATGCTGTTGATCGTATGAAGTTCGAACTGGGGAAGTGGAGGATTTCCT ATGGAATCAGTGTTCACCATTACTTCTTATTGTTCCATGTCCTGCAGGCTGCTGATATTAAACTCCTTGGAACTCTGAACAGAGATGATTTGAAGAAATT ATGTGGTGATAATTTTCCCGAGTGGATATCTTTCCCAGTGTTTGAACAGGTGAAATGGATGAACAAGAAACTAGGCAAGCTATGGCCCTATGTCGCTGAT GCTGCGACTATGGTGGTTAAAGAATCTGTTGAACCACTGCTAGAAGAGTACAGACCTCCTGGTATCACTTCATTGAAGTTTAATAAGTTTTCCATGGGAA CTGTGCCGCCTAAAATTGAAGGTATACGTGTTCAAAGTCTGAAGAAAGGTCAAGTTATTATGGATATAGATTTTCGATGGTGTGGTGATCCAAGCATCAT CCTAGGTGTTGAAGCTGCAATGGTTGCCTCAATACCAATTCAGCTGAAGGATCTTGAGATGTACTCTGTTATTCGGGTTATCTTCCAACTTTCTGAGGAG ATACCATGCATTTCTGCTGTTGTCGTTGCTTTGCTTTCTGAGCCAAAGCCTAAAATTGAGTACGTTCTAAAAGCTGTTGGTGGAAGCATATCTGCCATAC CCGGTTTGTCAGATATGATCGATGATACAGTCCAATCAATTGTTACCGATATGCTTCAGTGGCCTCACAGAATTGTTGTTCCAATTGGTGGCATACCTGT TGATACCAGTGATTTGGAGCTTAAACCCCAAGGGAAGCTGACGGTGACAGTAGTTAAAGCAAATGATTTGAAGAACATGGAAATGATTGGAAAGTCCGAT CCATATGTTACTCTACATATCCGACCGGTGTTCAAGGTCAAGACACATACAGTGGAAAACAATCTCAATCCTGTCTTTAATCAGACGTTTGAGTTGATCG CTGAAGACAAAGAGACTCAATCACTTATTCTCGAGGTGTTTGATAAAGACATCGGCCAAGACAAGCGATTGGGAATCGTGAAGTTACCGCTCGTTGATCT CGAAGCAGAGTCTTGGAAAGATATGGAGTTGAGACTTTTGCCGGCGCTTGATATGATGAAAATTAAAGATAAGAAGGATAGAGGAACTCTTACGCTGAAG GTACTGTACCACGAATTCAGCAAAGAGGAGCAGATGGCTGCTTTGGAGGAGGAGAAGAGGGTCTTAGAAGAAAGGAAGAAACTGAAAGAAGCAGGAGTAA TAGGGAGCACAATGGACGCCCTCGACGGTGCAGCTTCGTTAGTTGGCACGGGTCTAGCCGGAGGGGCTGGGCTCGTGGGGAGCGGCATTGGAGCCGGAGC TAACCTGGTAGGAAGCGGGGTGTCGGGTGGGGTTGGCATGGTTGGGAGTGGGCTTAGCAAAGCTGGAAAGTTCATGGGGAGGACGATTACTGGTCAGAGC AGCAAGAGGAGTAGCTCTAATTCTTCTACCCCCACCGGTCAGGAAAACGGCGCAGGAAAGCAGCTCTAG
AA sequence Show only first row Show all	>Lus10036532 pacid=23174609 polypeptide=Lus10036532 locus=Lus10036532.g ID=Lus10036532.BGIv1.0 annot-version=v1.0 MHVSCSSVLFEIVELFFYAVDRMKFELGKWRISYGISVHHYFLLFHVLQAADIKLLGTLNRDDLKKLCGDNFPEWISFPVFEQVKWMNKKLGKLWPYVAD AATMVVKESVEPLLEEYRPPGITSLKFNKFSMGTVPPKIEGIRVQSLKKGQVIMDIDFRWCGDPSIILGVEAAMVASIPIQLKDLEMYSVIRVIFQLSEE IPCISAVVVALLSEPKPKIEYVLKAVGGSISAIPGLSDMIDDTVQSIVTDMLQWPHRIVVPIGGIPVDTSDLELKPQGKLTVTVVKANDLKNMEMIGKSD PYVTLHIRPVFKVKTHTVENNLNPVFNQTFELIAEDKETQSLILEVFDKDIGQDKRLGIVKLPLVDLEAESWKDMELRLLPALDMMKIKDKKDRGTLTLK VLYHEFSKEEQMAALEEEKRVLEERKKLKEAGVIGSTMDALDGAASLVGTGLAGGAGLVGSGIGAGANLVGSGVSGGVGMVGSGLSKAGKFMGRTITGQS SKRSSSNSSTPTGQENGAGKQL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10036532 [exp]	0	1
AT2G29960		CYP19-4, ATCYP5...	CYCLOPHILIN 19-4, ARABIDOPSIS ...		Lus10014846 [exp]	3.9	0.7652
AT3G08890			Protein of unknown function, D...		Lus10002862 [exp]	13.3	0.7572
					Lus10017659 [exp]	14.2	0.7269
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10015542 [exp]	16.2	0.7550
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10006432 [exp]	18.3	0.7424
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10043394 [exp]	21.3	0.7396
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10001177 [exp]	24.5	0.7207
AT3G57990			unknown protein		Lus10016270 [exp]	28.5	0.6641
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027211 [exp]	28.9	0.7285
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10001751 [exp]	30.3	0.7023

Compare expression of checked genes

Lus10036532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.