Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45590 345 / 4e-111 Protein kinase superfamily protein (.1) AT4G25390 278 / 2e-87 Protein kinase superfamily protein (.1.2) AT5G51770 228 / 7e-67 Protein kinase superfamily protein (.1) AT1G80870 182 / 5e-50 Protein kinase superfamily protein (.1) AT3G58690 141 / 4e-37 Protein kinase superfamily protein (.1) AT5G11020 140 / 1e-36 Protein kinase superfamily protein (.1) AT3G09010 134 / 2e-34 Protein kinase superfamily protein (.1) AT2G25220 132 / 1e-33 Protein kinase superfamily protein (.1.2) AT1G80640 130 / 1e-33 Protein kinase superfamily protein (.1.2) AT4G05200 134 / 3e-33 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041395 [exp] 696 / 0 AT2G45590 647 / 0.0 Protein kinase superfamily protein (.1) Lus10027393 [exp] 292 / 7e-91 AT4G25390 555 / 0.0 Protein kinase superfamily protein (.1.2) Lus10031679 [exp] 219 / 2e-67 AT4G25390 280 / 1e-91 Protein kinase superfamily protein (.1.2) Lus10026069 [exp] 187 / 1e-51 AT1G80870 646 / 0.0 Protein kinase superfamily protein (.1) Lus10014361 [exp] 167 / 2e-44 AT1G80870 580 / 0.0 Protein kinase superfamily protein (.1) Lus10017647 [exp] 133 / 5e-34 AT3G58690 597 / 0.0 Protein kinase superfamily protein (.1) Lus10033783 [exp] 137 / 6e-34 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014648 [exp] 135 / 1e-33 AT5G10530 462 / 4e-154 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033606 [exp] 131 / 3e-33 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G072900 [exp] 454 / 6e-154 AT2G45590 576 / 0.0 Protein kinase superfamily protein (.1) Potri.002G150800 [exp] 452 / 9e-153 AT2G45590 563 / 0.0 Protein kinase superfamily protein (.1) Potri.015G134100 [exp] 316 / 5e-100 AT4G25390 536 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G131900 [exp] 308 / 5e-97 AT4G25390 486 / 5e-164 Protein kinase superfamily protein (.1.2) Potri.003G183100 [exp] 162 / 1e-42 AT1G80870 786 / 0.0 Protein kinase superfamily protein (.1) Potri.001G043700 [exp] 158 / 2e-41 AT1G80870 721 / 0.0 Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 140 / 8e-37 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 139 / 2e-36 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 137 / 1e-35 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 138 / 2e-34 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036533 pacid=23174576 polypeptide=Lus10036533 locus=Lus10036533.g ID=Lus10036533.BGIv1.0 annot-version=v1.0 ATGCCATCCCGCCTTCTCCTCTCTCTTCCTTCGCCGGAGCATCACCACCGTACACACCACCACAACCACCTCCCTGCAATCCTCGCGGGATCATTGGCTT TCGCTCTCATCTCCCTCCTCTTTCTATTCGTCTTCCTCTACCGTAAGCTCTCCCGCCACCGCACCGCCCCAACTTCTTCTTCTTCTTCAGACCTCAAATC GCCCACTCATCTCCAAACCACCAACAAATGCCGTCACTTCTCTTACTCTCTCCTCCGCCGCGCCACTGCTTCTTTCTCCACCTCCAACCGCCTCGGCCAC GGCGGCTTCGGTTGCGTCTACAAAGCCGTCCTGTCCTCTTCCTCCTCGCTCGCCGTCAAGGTCATGGACCCAAACGGCTCACTGCAAGGCGAGCGAGAGT TTCACAACGAACTCTCCATCGCATCATCTCTCGACTCGCCCTACATTGTCAGCCTCCTTGGCTACTCTACCGACCGCCGGAAGCGGAAGCTGGTGCTCGT GTACGAGCTGATGGAGAACCGGAGCTTGCAGGAGGCTCTGATGGATCGCAAGTGCGAGGAGCTCATGGACTGGAGCAAGCGGTATAGTGTGATGACTGAT GTTGCTAGAGGCTTAGAGTACCTCCACCATTTCTGTAACCCTCCCGTGATTCACGGCGACGTTAAGCCCAGCAATATCTTGCTGGATTCGGATTTCAACG CCAAGATCGGCGATTTCGGCCTCGCTAGATTGAAGACGGAGGAAATCGCCGAGTGCGCCGTCGGAGAAGACAACGGATCTATTCTGGAGGAGGCGGCGGA GAGTGTTGCAGCGACGACTGGATACGAAGACAGCTCCACCACCGCGGCAGCAGGTGTCGATCAATCGCCGGTGAGTTTGTCTAGTAAGGTTTTGGATTCG GATGCGTCGCCGGAGGCGGCGGCGAGGAGCATGTCGGAGGCGGATCGAGTGAGTATGGAGAGTGGGAGAGATTTGGAGAATGGAGGAGGAAAGAAAGGTG GATCGAGAAGGGATTGGTGGTGGAAGCAGGACAATGGAGTTGAATCGGAGTCTGGAAGAGTGAAGGATTACGTAATGGAATGGATTGGGAGTGAGATCAG TAAAGAGAATAGATCGAAACCTGGATGGAATAATCTCGAATCCCCAAGCTCCGTCGATAACAGTCTTTTGACGACGACGACGAGCTTAAAGATCGAGAAG AAGAAGAAGATAAGGAAGCGATTGGAATGGTGGGCGTCTCTAGACGAAGAGAGGAGGATGAAGAAAAAGGAAAAGAATCGGAAACCTAGAGAATGGTGGA AGGAAGAGTTCTGCGACGAGCTAACAAAGAAGAACGGGAAGAAGAAGAAGAAGAAAAGCAACGGCGGAGGAGAGTCATGGTGGCAGAAGGATGAAGATTC AGATTGGACTACTTCGACGACGGCGACTAAGAAGAAGAGGAAAAGCAGAGGGAGCATTGACTGGTGGATGGACGGATTAAGCGGCGAATTCAGAAGGAGG AACAGCAGCAGCCACGATTGGGCAAGCGGCGAAATCCCAAAGAGCGGCGGGATAAGCAGCACCCCTAGCATGCGAGGAACGGAGTGCTAA
AA sequence Show only first row Show all	>Lus10036533 pacid=23174576 polypeptide=Lus10036533 locus=Lus10036533.g ID=Lus10036533.BGIv1.0 annot-version=v1.0 MPSRLLLSLPSPEHHHRTHHHNHLPAILAGSLAFALISLLFLFVFLYRKLSRHRTAPTSSSSSDLKSPTHLQTTNKCRHFSYSLLRRATASFSTSNRLGH GGFGCVYKAVLSSSSSLAVKVMDPNGSLQGEREFHNELSIASSLDSPYIVSLLGYSTDRRKRKLVLVYELMENRSLQEALMDRKCEELMDWSKRYSVMTD VARGLEYLHHFCNPPVIHGDVKPSNILLDSDFNAKIGDFGLARLKTEEIAECAVGEDNGSILEEAAESVAATTGYEDSSTTAAAGVDQSPVSLSSKVLDS DASPEAAARSMSEADRVSMESGRDLENGGGKKGGSRRDWWWKQDNGVESESGRVKDYVMEWIGSEISKENRSKPGWNNLESPSSVDNSLLTTTTSLKIEK KKKIRKRLEWWASLDEERRMKKKEKNRKPREWWKEEFCDELTKKNGKKKKKKSNGGGESWWQKDEDSDWTTSTTATKKKRKSRGSIDWWMDGLSGEFRRR NSSSHDWASGEIPKSGGISSTPSMRGTEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45590			Protein kinase superfamily pro...		Lus10036533 [exp]	0	1
AT2G45590			Protein kinase superfamily pro...		Lus10036534 [exp]	1.0	0.8447
AT4G22720			Actin-like ATPase superfamily ...		Lus10029108 [exp]	3.5	0.7933
AT2G45590			Protein kinase superfamily pro...		Lus10041395 [exp]	5.7	0.8444
AT4G29240			Leucine-rich repeat (LRR) fami...		Lus10012929 [exp]	8.0	0.8023
AT3G04470			Ankyrin repeat family protein ...		Lus10032775 [exp]	8.5	0.7868
AT3G03570			Protein of unknown function (D...		Lus10020328 [exp]	10.5	0.8131
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10009873 [exp]	12.8	0.8012
AT3G22440			FRIGIDA-like protein (.1)		Lus10006113 [exp]	13.0	0.7677
AT1G53900			Eukaryotic translation initiat...		Lus10037452 [exp]	18.2	0.7335
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10029403 [exp]	19.5	0.7300

Compare expression of checked genes

Lus10036533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.