Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003038 [exp] 77 / 3e-17 ND 61 / 7e-10 Lus10005532 [exp] 74 / 4e-16 ND 52 / 3e-07 Lus10008569 [exp] 64 / 6e-13 AT1G48120 50 / 6e-07 hydrolases;protein serine/threonine phosphatases (.1) Lus10024253 [exp] 60 / 2e-11 AT1G48120 40 / 4e-04 hydrolases;protein serine/threonine phosphatases (.1) Lus10012774 [exp] 58 / 4e-11 ND 36 / 0.007 Lus10032970 [exp] 54 / 9e-10 ND / Lus10017809 [exp] 54 / 1e-09 ND / Lus10002004 [exp] 54 / 1e-09 AT1G48120 58 / 2e-10 hydrolases;protein serine/threonine phosphatases (.1) Lus10023588 [exp] 53 / 3e-09 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036535 pacid=23174579 polypeptide=Lus10036535 locus=Lus10036535.g ID=Lus10036535.BGIv1.0 annot-version=v1.0 ATGTCGTCGGACAGTTTGGGATGTCCCAGCCCATCCCCACTGTGGATATGTGGAGGGATAGGTCATGTTCTTGCTCGGACTAACGAGGATGAACGGGCAC GCGTGAGACGTGAGAGTGGATCAGTACCTTGTCCAATGGGGGGATCATATTGGACCACGTGTCAAAAAGTGCGTTTCTCGACGATCCGGAGAGGTGGCAC TGCCACGACGAGTACATGGTGTGGTACCGTCAGTACACTCGTCGGTAGACTTCGAGACGTGGGACAGTGCAACAGTCCATCGGACTTCTCATATTATTAT GATTGTGGCGGCGGCTTGGGGCGGACTTGCGACGGATATGAGAGTAGAGGAAGCGGCGGCGGCGACAGAGTGTTGGCAGCTTCCAGCGGGTGGGGCCGTG TGAGGCGAGCGGCGGCGGCGAGTGGCTGGAGATGGCGAGCAAGCGACGGCTGGCTGTGGCCCAACTCTTAG
AA sequence Show only first row Show all	>Lus10036535 pacid=23174579 polypeptide=Lus10036535 locus=Lus10036535.g ID=Lus10036535.BGIv1.0 annot-version=v1.0 MSSDSLGCPSPSPLWICGGIGHVLARTNEDERARVRRESGSVPCPMGGSYWTTCQKVRFSTIRRGGTATTSTWCGTVSTLVGRLRDVGQCNSPSDFSYYY DCGGGLGRTCDGYESRGSGGGDRVLAASSGWGRVRRAAAASGWRWRASDGWLWPNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036535 [exp]	0	1
AT3G19620			Glycosyl hydrolase family prot...		Lus10002128 [exp]	1.0	0.9972
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10015079 [exp]	2.0	0.9871
					Lus10013528 [exp]	21.3	0.9777
AT4G22860			Cell cycle regulated microtubu...		Lus10031690 [exp]	21.8	0.9346
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Lus10039904 [exp]	22.2	0.9312
AT3G28910	MYB	AtMYB30, MYB30	myb domain protein 30 (.1)		Lus10015369 [exp]	23.5	0.9191
					Lus10036646 [exp]	24.7	0.9744
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10027584 [exp]	24.8	0.9054
AT2G47485			unknown protein		Lus10036328 [exp]	25.2	0.9013
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10003792 [exp]	25.3	0.9341

Compare expression of checked genes

Lus10036535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.