Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45630 156 / 8e-49 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 112 / 3e-30 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G79870 77 / 5e-17 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT5G28310 53 / 1e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G28463 41 / 7e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036537 [exp] 243 / 5e-81 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10041393 [exp] 240 / 1e-79 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10041392 [exp] 119 / 8e-34 AT2G45630 150 / 2e-44 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10006708 [exp] 117 / 4e-32 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10041394 [exp] 108 / 1e-30 ND 94 / 3e-25 Lus10014133 [exp] 110 / 3e-29 AT1G12550 340 / 1e-116 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10037552 [exp] 108 / 2e-28 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025796 [exp] 102 / 3e-26 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 102 / 3e-26 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151100 [exp] 188 / 2e-59 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 170 / 6e-52 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073500 [exp] 166 / 1e-50 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151200 [exp] 164 / 6e-50 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G113250 [exp] 132 / 2e-37 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.003G119000 [exp] 120 / 5e-33 AT2G45630 327 / 2e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G052700 [exp] 101 / 3e-26 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.013G046150 [exp] 84 / 8e-21 AT1G79870 164 / 3e-50 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G183700 [exp] 85 / 5e-20 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10036536 pacid=23174553 polypeptide=Lus10036536 locus=Lus10036536.g ID=Lus10036536.BGIv1.0 annot-version=v1.0 ATGGAATCTCTGGCGGCGCAGGGTGACGATCTCCCCCTGGTCTTGGTTCTAATGAAGATCCCGTTCTTTGACCACCACTTCACTTCTACCAAATTCCGCT ACTTGAACGCCTTTGATTCGACCCTCCCGCTTCATGAGTTCCTGACCGCCCACACGCGGTCAATACGTGCAGTGTTCGCCTCCGGCGGTGCGATCGTAGA TGCCGGCGTCCTCGATCTACTTCCGGAGTTGCGTGTCATCGTCACCGCCAGCTCCGGGCTTAACAAGATCGACTTACTCGATTGCCGACGCCGAGGGATC AAGATCGCTAACGCAGGAGATGTATATTCGGCCGACGTGGCCGATTGCGCCGTAGGGTTGTTGATCGACGTTTTGAGGAAGATTTCGGCCGGCAATCGCT ACGTCAAGAAAGGCCTCTGGGGCTGTAAAGGAGACTATCCCCTCGGTTCCAAGCTTAAACGGACCATGATGAGCGCGTCGGGAGGAGGACGACGAGCGAT CCGGCGAGAAGAAAGAGGGCGGTATAACAGCAAGTGA
AA sequence Show only first row Show all	>Lus10036536 pacid=23174553 polypeptide=Lus10036536 locus=Lus10036536.g ID=Lus10036536.BGIv1.0 annot-version=v1.0 MESLAAQGDDLPLVLVLMKIPFFDHHFTSTKFRYLNAFDSTLPLHEFLTAHTRSIRAVFASGGAIVDAGVLDLLPELRVIVTASSGLNKIDLLDCRRRGI KIANAGDVYSADVADCAVGLLIDVLRKISAGNRYVKKGLWGCKGDYPLGSKLKRTMMSASGGGRRAIRREERGRYNSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036536 [exp]	0	1
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036537 [exp]	1.0	0.9788
AT1G61590			Protein kinase superfamily pro...		Lus10034757 [exp]	2.4	0.9755
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	3.2	0.9760
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024078 [exp]	5.0	0.9692
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10020977 [exp]	6.9	0.9584
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	6.9	0.9693
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	9.5	0.9661
AT1G61590			Protein kinase superfamily pro...		Lus10033294 [exp]	9.5	0.9683
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	10.2	0.9659
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	11.2	0.9617

Compare expression of checked genes

Lus10036536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.