Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45630 384 / 1e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 333 / 3e-114 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G79870 261 / 5e-86 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT5G14780 100 / 1e-23 FDH formate dehydrogenase (.1) AT1G72190 97 / 2e-22 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G17745 95 / 2e-21 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT1G68010 93 / 5e-21 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT4G34200 93 / 1e-20 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT3G19480 84 / 9e-18 D-3-phosphoglycerate dehydrogenase (.1) AT5G28463 40 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041393 [exp] 624 / 0 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10006708 [exp] 308 / 3e-104 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10037552 [exp] 290 / 3e-97 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 289 / 7e-97 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10014133 [exp] 289 / 1e-96 AT1G12550 340 / 1e-116 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10025796 [exp] 288 / 1e-96 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025795 [exp] 276 / 1e-91 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 270 / 3e-89 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10036536 [exp] 244 / 2e-81 AT2G45630 156 / 1e-48 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151100 [exp] 468 / 9e-167 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 437 / 2e-154 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073500 [exp] 414 / 8e-146 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151200 [exp] 408 / 2e-143 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G113250 [exp] 365 / 3e-126 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.003G119000 [exp] 349 / 2e-120 AT2G45630 327 / 2e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G052700 [exp] 285 / 2e-95 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G183700 [exp] 268 / 1e-88 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.004G175800 [exp] 99 / 9e-23 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2) Potri.014G161300 [exp] 96 / 4e-22 AT5G14780 581 / 0.0 formate dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10036537 pacid=23174390 polypeptide=Lus10036537 locus=Lus10036537.g ID=Lus10036537.BGIv1.0 annot-version=v1.0 ATGGATTCTCCGGCGACGCAAGAGGACGATCTTCCCCAGGTCCTGGTTCTGAAGAAGCCGCCGTACTTCTCCGCAACAGAAGGCCATCACTTAACTTCCA CCAAGTTCCTCTACTTGAACGCTTTTGATTCAACCCTCCCGCTTCACGAGTTTTTGACCGCCCACGCCCGGTCAGTACAAGCACTGGTCTCCTCCGGCGG GGCAATCGTAAACGCCGCCGTCCTCGATCTTCTCCCGGAGGTTTGTGTCATCGTCACCACCAGCGCCGGTCTTAACCAGCTCGACTTACTCGAGTGCCGA CGCCGAGGCATTAAGATCGCCAACGCAGGGGATATATATTCGGCTGACGTTGCGGATTGCGCCGTCGGATTGTTGATCGATGTTTTGAGGAAGATCTCCG CCGGCAAGCGGTTCGTCAAGAGCGGGCTCTGGGCCTCTAAAGGAGACTATCCCCTCGGTTCCAAGGTGGGAGGCAAGCGGATCGGAATAGTAGGCCTAGG TCGAATCGGCTACCAAATTGCGAAAAGGCTCGAGGCATTCGGTTGCAGCATCTCGTACAACTCCAGGAAGCAAAAGACTAACGCAACTTACCCTTTCTAC GCACAAGTCCCGGACCTTGCTGCAAACTCGGATGCTCTTATCATCTGCTGTGGGTTGACCGAGCAAACGCGACACATCATAGACAAGCAAGTGATGGCGG CCCTAGGTAAGGAAGGGGTGATCATCAACATTGCGAGGGGGGCAGTTGTCGACGAGCAGGAAATGGTGAGGTGTCTTGTGGAAGGTGAGATTGCAGGTGC TGGACTGGATGTGTTCGAGAACGAGCCGGATGTTCCGAAAGTGCTAATGGAGTTGGACAATGTTGTGTTGAGTCCGCATTGTTCTGCTTTCACCAGGGAA TCTGTGATGGACATTGCTGGACTTGTGGTGGGGAACCTGGAAGCTTTCTTCTCCAACAAGCCATTGTTGTCTGAGTATAAGGATCATTAA
AA sequence Show only first row Show all	>Lus10036537 pacid=23174390 polypeptide=Lus10036537 locus=Lus10036537.g ID=Lus10036537.BGIv1.0 annot-version=v1.0 MDSPATQEDDLPQVLVLKKPPYFSATEGHHLTSTKFLYLNAFDSTLPLHEFLTAHARSVQALVSSGGAIVNAAVLDLLPEVCVIVTTSAGLNQLDLLECR RRGIKIANAGDIYSADVADCAVGLLIDVLRKISAGKRFVKSGLWASKGDYPLGSKVGGKRIGIVGLGRIGYQIAKRLEAFGCSISYNSRKQKTNATYPFY AQVPDLAANSDALIICCGLTEQTRHIIDKQVMAALGKEGVIINIARGAVVDEQEMVRCLVEGEIAGAGLDVFENEPDVPKVLMELDNVVLSPHCSAFTRE SVMDIAGLVVGNLEAFFSNKPLLSEYKDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036537 [exp]	0	1
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036536 [exp]	1.0	0.9788
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	3.5	0.9718
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	6.0	0.9690
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	6.0	0.9690
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10011569 [exp]	6.0	0.9466
AT3G53990			Adenine nucleotide alpha hydro...		Lus10021501 [exp]	7.5	0.9352
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Lus10036823 [exp]	8.5	0.9528
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	8.7	0.9654
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024078 [exp]	9.8	0.9610
AT1G61590			Protein kinase superfamily pro...		Lus10034757 [exp]	13.2	0.9537

Compare expression of checked genes

Lus10036537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.