Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25420 437 / 2e-153 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G51810 436 / 6e-153 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT5G07200 418 / 7e-146 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT1G60980 406 / 4e-141 ATGA20OX4 gibberellin 20-oxidase 4 (.1) AT1G44090 322 / 8e-108 GA2OX5, ATGA20OX5 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5, gibberellin 20-oxidase 5 (.1) AT5G05600 182 / 9e-54 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 167 / 2e-48 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 162 / 2e-46 ATJRG21 jasmonate-regulated gene 21 (.1) AT1G78550 160 / 9e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 159 / 6e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041390 [exp] 669 / 0 AT5G51810 468 / 2e-165 gibberellin 20 oxidase 2 (.1) Lus10027399 [exp] 471 / 9e-167 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 465 / 1e-163 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) Lus10015016 [exp] 433 / 1e-151 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006350 [exp] 429 / 3e-150 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006722 [exp] 426 / 7e-149 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1) Lus10011476 [exp] 160 / 3e-45 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10015573 [exp] 155 / 9e-44 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011979 [exp] 155 / 1e-43 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151300 [exp] 504 / 8e-180 AT4G25420 503 / 1e-179 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G134600 [exp] 478 / 3e-169 AT5G51810 525 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.014G073700 [exp] 475 / 3e-168 AT4G25420 481 / 9e-171 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G132400 [exp] 459 / 8e-162 AT5G51810 522 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.007G103800 [exp] 368 / 5e-126 AT5G51810 408 / 6e-142 gibberellin 20 oxidase 2 (.1) Potri.005G065400 [exp] 352 / 7e-120 AT5G51810 402 / 8e-140 gibberellin 20 oxidase 2 (.1) Potri.005G184400 [exp] 342 / 2e-116 AT5G51810 380 / 5e-131 gibberellin 20 oxidase 2 (.1) Potri.005G184200 [exp] 334 / 2e-113 AT5G51810 383 / 1e-132 gibberellin 20 oxidase 2 (.1) Potri.012G006300 [exp] 172 / 3e-50 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G382400 [exp] 167 / 4e-48 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10036539 pacid=23174637 polypeptide=Lus10036539 locus=Lus10036539.g ID=Lus10036539.BGIv1.0 annot-version=v1.0 ATGCCTCCTCCTCCTCCTTCTATGGCTGATTCAGCCGAGCCATTAGTTTTCGACGCTTCTCTTCTCCAGAACCAGTCCAACATTCCGCCGCAGTTCGTCT GGCCCCACGACGAGAGGCCGGGAACCGAATCCCCGCCTGTGCTGGCCATCCCGCCGATCGACCTACACAGCTTCATGTCCGGGGACCCCGCCGCCGTGTT GACGGCCACCAAGGCGGTGGACGAGGCGTGTAGGAAGCACGGATTCTTCCTGGTTGTTAACCACGGAGTGGACGCCGAACTGGTGACTCAAGCTCACCGG TGCATGGACCAGTTCTTCGGGATGAAGATGTCGGAGAAGCAGAGAGCGCAGAGGAAAACAGGGGAGCTCTGTGGCTACGCTAGTAGCTTCACGGGGAGAT TCTCGTCCAAACTCCCCTGGAAGGAGACGCTGTCTTTTCGTTACTGCGCCGATCGGAACTCGGCCGCCGCCGATGATAGTAACATTGTTCGTGATTACCT CTTGAATAAACTGGGAGAAGACTTCGCACACTTCGGGGAGGTGTACGAAGGGTATTGCGAAGCGATGAGCAATTTGTCGTTGGGGATAATGGAGCTACTG GGAGTGAGTCTAGGAGTTGGAGGAGAGCATTTCAGGGAGTTTTACAAAGGGAATAATTCAATAATGAGATTGAATTACTACCCACCTTGCCAAAAGCCAG ACCTAGCACTTGGCACTGGCCCTCATTGTGACCCTACTTCCTTAACTATACTCCATCAAGATCAAGTTGGTGGCCTCGAGGTCTTTGTCGATGGCCAATG GCACTCCGTTTCACCTCACCCGGGCGCTTTTGTCGTCAACATCGGTGATACTTTCATGGCACTATCGAACGGGGTTTACCGGAGTTGCCTGCACCGGGCG GTGTTGAACCGGGACCAAGTGAGGAAATCCTTAGCATTCTTCTTGTGTCCAAACGGGGAAAAGGTGGTCAAGCCTCCGCAGTCGCTGCTCAACAATCCAA GAATAACAAGAGCTTACCCAGATTTCACCTGGCCGACATTGCTGGAGTTCACACAGAGTAATTACAGGGCCGATATGAAAACCTTCGACGCATTCACGAC ATGGCTTCAAACACAACAAACAACAAAATTGATTACATGA
AA sequence Show only first row Show all	>Lus10036539 pacid=23174637 polypeptide=Lus10036539 locus=Lus10036539.g ID=Lus10036539.BGIv1.0 annot-version=v1.0 MPPPPPSMADSAEPLVFDASLLQNQSNIPPQFVWPHDERPGTESPPVLAIPPIDLHSFMSGDPAAVLTATKAVDEACRKHGFFLVVNHGVDAELVTQAHR CMDQFFGMKMSEKQRAQRKTGELCGYASSFTGRFSSKLPWKETLSFRYCADRNSAAADDSNIVRDYLLNKLGEDFAHFGEVYEGYCEAMSNLSLGIMELL GVSLGVGGEHFREFYKGNNSIMRLNYYPPCQKPDLALGTGPHCDPTSLTILHQDQVGGLEVFVDGQWHSVSPHPGAFVVNIGDTFMALSNGVYRSCLHRA VLNRDQVRKSLAFFLCPNGEKVVKPPQSLLNNPRITRAYPDFTWPTLLEFTQSNYRADMKTFDAFTTWLQTQQTTKLIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10036539 [exp]	0	1
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10032169 [exp]	2.2	0.9305
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10014518 [exp]	4.0	0.9257
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10034025 [exp]	4.2	0.9253
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10017668 [exp]	4.2	0.9120
AT5G55560			Protein kinase superfamily pro...		Lus10016594 [exp]	4.6	0.9051
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10004428 [exp]	6.3	0.8970
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10032640 [exp]	6.3	0.9197
AT5G27690			Heavy metal transport/detoxifi...		Lus10033469 [exp]	6.6	0.9237
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Lus10013042 [exp]	8.8	0.8895
AT1G76130		ATAMY2, AMY2	ARABIDOPSIS THALIANA ALPHA-AMY...		Lus10021836 [exp]	9.8	0.8867

Compare expression of checked genes

Lus10036539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.