Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61130 963 / 0 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 679 / 0 GAUT3 galacturonosyltransferase 3 (.1.2) AT5G47780 629 / 0 GAUT4 galacturonosyltransferase 4 (.1) AT2G46480 606 / 0 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G25140 467 / 7e-157 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G18580 447 / 4e-149 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 442 / 2e-147 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT3G02350 429 / 6e-142 GAUT9 galacturonosyltransferase 9 (.1) AT2G30575 419 / 2e-137 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT1G06780 409 / 1e-133 GAUT6 galacturonosyltransferase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041389 [exp] 1209 / 0 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 1068 / 0 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 711 / 0 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 681 / 0 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038739 [exp] 627 / 0 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10011834 [exp] 469 / 3e-157 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10013506 [exp] 458 / 1e-153 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1) Lus10007979 [exp] 456 / 6e-153 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1) Lus10018554 [exp] 456 / 7e-153 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G073800 [exp] 1039 / 0 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.002G151400 [exp] 1038 / 0 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 693 / 0 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.016G001700 [exp] 627 / 0 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 590 / 0 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G246500 [exp] 467 / 8e-157 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.019G108900 [exp] 461 / 6e-155 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1) Potri.013G146200 [exp] 452 / 2e-151 AT2G20810 820 / 0.0 galacturonosyltransferase 10 (.1) Potri.004G111000 [exp] 452 / 6e-151 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.015G060800 [exp] 451 / 1e-150 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8 CL0072 [flax] [poplar] Ubiquitin PF06487 [flax] [poplar] SAP18 Sin3 associated polypeptide p18 (SAP18)
Representative CDS sequence Show only first row Show all	>Lus10036540 pacid=23174669 polypeptide=Lus10036540 locus=Lus10036540.g ID=Lus10036540.BGIv1.0 annot-version=v1.0 ATGGCGGGAATGGCAGAACCACCGAGGAGACAAGGAGGGAGACCGATGCCGCCGCCTGGTAATAGGGGACCTCCGATTTCCCGAGGCCCGCCTCCTCTTC CTCCCGTCGATCGCGAGAAGACATGTCCTCTGCTGCTTCGGGTTTTCACCAAGATTGGAGGTCATCACGGGAAAGAAGAATTCCAAGTTAGAGGCAAGGA GCCCAAGGACGAGGTTCAAATCTATACATGGAAAGATGCAACTCTCCGTGAATTGACTGATTTGGTCAAAGAAGTGGCTCCGGCAGCAAGGAGAAGAGAT GCACTACTGTCATTTGCTTTTGCCTATCCAGATAAGAATGGCCGTTTTGTGGTGCGAGAGGTTGGGAAGACTTACTCTAACCGGATCGGGAAGTTAGATG ATAACAAGGCGTTGGCTGAAATTGGCTTCCAGGACCTGGATTGGAGAGAACGGCTCGCATTACAACACGTTAAATCCCTTTTCACGAAGGATGTCATTGA TGTGATCACCGCTAATACTGCTGACTTGGGGCCTTTTAGTCTTGATGCTTTTAGAAGAAGCAATTTGTCTGCTTCATGGACTCTTGTTGGAGCTGAAACT TCAGTTAACAATTCATCTATTTCTGAGGTAAAGCAGAAGCACTCAGCTACTATTATCAAGTCAGAAACTCCGAAGAGTAAACATAGCAAGCTGTCTGATG ATGAGGCTCAATTCATTGTCTCGCCTGAAAAACTTAGTCGGAGGCAACTAAGAGAAAAAAGACGTGAGAGGCGTGCAGCTGACTTGGTCCGGCATGGAGA TGAAGCAACTATAAAACTCGAAAATGCAGCTATTGAACGATCTAAATCAGTTGATTCTGCAGTTCTGGGTAAATACAATATATGGCGGAAAGAGATTGAC AATGAGAATGCTGATTCAACCGTACGCTTAATTCGAGATCAGATGATAATGGCCAGGGTATATATCAGTATTGCAAAGATGAAGAACAAGCTTGATTTGC AACAGGAGCTACAAACTCGGCTAAAGGAGAGCCATCGTGCAATAGGTGATGCAACAGCTGACTTTGAACTACAACAGAGTGCTGCGGAGAAAATTAAGAA CATGGGGCAAGTTCTGTCGAAAGCCAGGGAAAATTTATACGATTGTAAGATGGTCACTGGCAAGCTCAGAGCAATGCTCCAGACAGCTGACGAGCAAGTT AGGAGCTTGAAAAAGCAGAGCACATTCCTGAGTCAATTGGCTGCAAAAACGGTTCCTAATGGAATTCATTGCTTTTTTATGCGCCTAACAATAGACTACT ATCTCCTTCCTCCAGAGAAGAGAAAGTTCCCGCAAAGTGAGAATCTGGAAAATCCAAATTTGCATCATTACGCCCTCTTCTCCGACAATGTGTTGGCAGC TTCAGTCGTTGTCAATTCAACTATTATGAATGCAAAGGATCCTTCCAAACATGTATTTCACCTTGTTACTGATAAATTAAACTTTGGAGCAATGAACATG TGGTTTCTTTTGAACCCTCCTGGAAAGGCGACTATCCATGTTGAAAATGTAGATGAGTTTAAGTGGCTTAACTCATCTTACTGCCCTGTACTCCGTCAGC TGGAATCATCTGCAATGAAAGAGTATTACTTCAAGGCAAATCATCCTACATCTCTTTCAGCTGGTGCATCGAATCTGAAGTACCGAAATCCCAAGTATCT TTCAATGCTCAACCACCTAAGGTTTTATCTTCCAGAGGTTTACCCGAAACTGGACAAGATCCTTTTCCTCGATGATGACATCGTTGTACAGAAGGATCTG ACTGGACTGTGGTCTGTAGATCTGCATGGAAAAGTGAATGGCGCGGTGGAAACTTGTGGTGAAAGCTTTCACCGGTTTGACAAGTACCTTAACTTTTCGA ATCCTCATATTGCTAGAAACTTTGATCCAAATGCTTGTGGTTGGGCATATGGTATGAACATGTTTGATCTTCAAGAATGGAAAAGGAAGGATATCACAGG CATATATCATAAGTGGCAAACCATGAATGAAGATAGGGTACTTTGGAAGCTTGGGACACTTCCTCCAGGGTTGATAACATTTTACGGCCTGACACATCCT CTCGAGAAGTCGTGGCATGTGCTCGGTCTAGGTTACAATCCCAGCGTCGATAAAGGGGAGATTGAGCGTGCTGCGGTTGTTCACTATAATGGCAACATGA AACCATGGCTCGAGTTGGCAATGACAAAGTACAGGCCGTATTGGACAAAGTACATCAAATATGATCATCCTTATCTCCGCAACTGTCGTCTCACTATTTG A
AA sequence Show only first row Show all	>Lus10036540 pacid=23174669 polypeptide=Lus10036540 locus=Lus10036540.g ID=Lus10036540.BGIv1.0 annot-version=v1.0 MAGMAEPPRRQGGRPMPPPGNRGPPISRGPPPLPPVDREKTCPLLLRVFTKIGGHHGKEEFQVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRD ALLSFAFAYPDKNGRFVVREVGKTYSNRIGKLDDNKALAEIGFQDLDWRERLALQHVKSLFTKDVIDVITANTADLGPFSLDAFRRSNLSASWTLVGAET SVNNSSISEVKQKHSATIIKSETPKSKHSKLSDDEAQFIVSPEKLSRRQLREKRRERRAADLVRHGDEATIKLENAAIERSKSVDSAVLGKYNIWRKEID NENADSTVRLIRDQMIMARVYISIAKMKNKLDLQQELQTRLKESHRAIGDATADFELQQSAAEKIKNMGQVLSKARENLYDCKMVTGKLRAMLQTADEQV RSLKKQSTFLSQLAAKTVPNGIHCFFMRLTIDYYLLPPEKRKFPQSENLENPNLHHYALFSDNVLAASVVVNSTIMNAKDPSKHVFHLVTDKLNFGAMNM WFLLNPPGKATIHVENVDEFKWLNSSYCPVLRQLESSAMKEYYFKANHPTSLSAGASNLKYRNPKYLSMLNHLRFYLPEVYPKLDKILFLDDDIVVQKDL TGLWSVDLHGKVNGAVETCGESFHRFDKYLNFSNPHIARNFDPNACGWAYGMNMFDLQEWKRKDITGIYHKWQTMNEDRVLWKLGTLPPGLITFYGLTHP LEKSWHVLGLGYNPSVDKGEIERAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPYLRNCRLTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10036540 [exp]	0	1
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10022924 [exp]	2.4	0.8772
AT5G20300		Toc90	translocon at the outer envelo...		Lus10027712 [exp]	3.0	0.8637
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10024894 [exp]	3.3	0.8779
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10024285 [exp]	3.5	0.8580
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10017356 [exp]	4.8	0.8268
AT2G34250			SecY protein transport family ...		Lus10031399 [exp]	5.7	0.8379
AT1G12530			unknown protein		Lus10006705 [exp]	7.3	0.7998
AT5G16720			Protein of unknown function, D...		Lus10002289 [exp]	8.9	0.8473
AT1G71900			Protein of unknown function (D...		Lus10015480 [exp]	10.2	0.8203
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Lus10024709 [exp]	11.7	0.8312

Compare expression of checked genes

Lus10036540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.