Plant FIBer expression Database

Lus10036541 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02030 284 / 3e-87 Vps51/Vps67 family (components of vesicular transport) protein (.1), Vps51/Vps67 family (components of vesicular transport) protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041387
[exp]
472 / 1e-159 AT4G02030 1051 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1), Vps51/Vps67 family (components of vesicular transport) protein (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G196300
[exp]
318 / 3e-100 AT4G02030 1020 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1), Vps51/Vps67 family (components of vesicular transport) protein (.2)
Potri.014G120900
[exp]
307 / 5e-96 AT4G02030 1004 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1), Vps51/Vps67 family (components of vesicular transport) protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0295 Vps51 PF08700 Vps51 Vps51/Vps67
Representative CDS sequence
>Lus10036541 pacid=23174412 polypeptide=Lus10036541 locus=Lus10036541.g ID=Lus10036541.BGIv1.0 annot-version=v1.0
ATGGCGATGGAGGACGTGCCCTTGGACGACAAGGCGAAACGAATGAGAGATCTATTGTCGAGTTTCTACGCTCCAGCGGATCCTTCAATGTCCACCGATA
GTCTCCCGAGAGGTGCTTCCTTAGACGCCATCAACACAACTTCATTTGATGCAGATCAGTACATGAATCTCCTGGTGCAAAGGTCCAACTTAGAAGGGCT
TCTGCAAAGACATGTTGAAATGGCAGCTGAAATAAAGAATCTGGACACTGATCTGCAAATGCTAGTCTATGAAAATTACAACAAGTTTATCAGTGCTACT
GATGCAATCAAGAGGATGAAGAGCAACATTGTGGGCATGGAACATCTCTTCTTGGGTAGGTTAGTTTCTCATAGATACCTACGAACTGCAGGAATAATAT
GGAGAGATGTCCTCCTGATTGATGAAGTATTGCCAGAGGCTTTGCTACATGATTACTGTTTCAAGGTATCCCAGAACGCTATCAAACAGTATGTTTCAAG
CATGTTTGCTCATCTTTTAAATGATGTCTCAGATGCTCTGACAGATGTCCATGTCACCAAAAAGGAGGCGCTAGAAGAAAATCCATTGCAGGTTGCTATG
GAAGCCGGCAAAAATTCATTGCTCAAAGGAAGCATGGTTGTGTTACTGGGCTTCCGTCAACTTCTGGATGACAACTTAGATCTGCTAGTCAAACAAAGGG
AACTGATGGTTGACTGGATTCAAGAAGGTTTTCAACAGTTCTTTGAGGCATTGGATAGTCAGTTTCTTTTGCTTTCCGGAAGAAATAAATCCATCCCTCA
AGAATACAGTCCACGAGAGGGGTTACAAGCTGAAAATGTGCTTTCGGGTCTTGTCTTGGTTTTGGCTCAGCTTTCTGTTTTTATTGAACAAACAGCAATC
CCTAGAATTGCAGAGGCAAGAGATCTTTTTCTAGCTCATGAAATTGCTGCTTCTTTCCCTGGTGGTGGTGCTTGGCGATATGAACATGGACCGGGGTTTC
TTCCTGCTGAATTGAGTCGAGTCTTTCGGTCTAGCAGTGAGAAGTTTCTGCACCATTTTATAAATATGAGGACGCATCGAATATCAGTTCTCTTAAGGAA
AAGGTTCACCACTCCAAATTGGATCAAGCACAAGGAGCCACGGGAGGTTCACATGTTCGTTGATTTATTCCTTCAGGAGGAGTCTGTTTTGACTACCATC
GTAAAACTCGGGCTCAGAAGCTTGCAAGAATTTGTTCGACTTCAGACTTTAAATCGCAGTGGATTTCAGCAGATTCAGTTGGATATTCAGTTTCTAAGGA
CTCCTCTCAAGGAACTAGCTGAAGATGAAGCTGCCATCGACTTTTTGCTTGATGAGGTGATCGTCGGTGCTTCAGATCGTTGTCTCGACCCAACTCCATT
GGAACCGCCTATTTTAGACAAACTGATACAAGCAAAGATGGCTGGATCAAAGGATCAAAGTTCCAGTTCTTCCTAA
AA sequence
>Lus10036541 pacid=23174412 polypeptide=Lus10036541 locus=Lus10036541.g ID=Lus10036541.BGIv1.0 annot-version=v1.0
MAMEDVPLDDKAKRMRDLLSSFYAPADPSMSTDSLPRGASLDAINTTSFDADQYMNLLVQRSNLEGLLQRHVEMAAEIKNLDTDLQMLVYENYNKFISAT
DAIKRMKSNIVGMEHLFLGRLVSHRYLRTAGIIWRDVLLIDEVLPEALLHDYCFKVSQNAIKQYVSSMFAHLLNDVSDALTDVHVTKKEALEENPLQVAM
EAGKNSLLKGSMVVLLGFRQLLDDNLDLLVKQRELMVDWIQEGFQQFFEALDSQFLLLSGRNKSIPQEYSPREGLQAENVLSGLVLVLAQLSVFIEQTAI
PRIAEARDLFLAHEIAASFPGGGAWRYEHGPGFLPAELSRVFRSSSEKFLHHFINMRTHRISVLLRKRFTTPNWIKHKEPREVHMFVDLFLQEESVLTTI
VKLGLRSLQEFVRLQTLNRSGFQQIQLDIQFLRTPLKELAEDEAAIDFLLDEVIVGASDRCLDPTPLEPPILDKLIQAKMAGSKDQSSSSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G02030 Vps51/Vps67 family (components... Lus10036541
[exp]
0 1
AT2G45880 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7... Lus10017820
[exp]
4.0 0.8119
AT3G25840 Protein kinase superfamily pro... Lus10035032
[exp]
4.5 0.8422
AT5G57500 Galactosyltransferase family p... Lus10000407
[exp]
10.7 0.8380
Lus10017572
[exp]
13.2 0.8209
AT4G00290 Mechanosensitive ion channel p... Lus10005121
[exp]
18.3 0.7943
AT5G49570 ATPNG1 peptide-N-glycanase 1 (.1) Lus10015918
[exp]
23.2 0.8182
AT2G34930 disease resistance family prot... Lus10002755
[exp]
25.2 0.8318
AT1G55340 Protein of unknown function (D... Lus10010312
[exp]
26.2 0.8084
AT2G13680 GLS2, ATGSL02, ... ARABIDOPSIS THALIANA GLUCAN SY... Lus10000830
[exp]
29.2 0.7689
Lus10041093
[exp]
31.8 0.8072

Lus10036541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.