Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45660 110 / 2e-30 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT5G62165 90 / 1e-22 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT4G22950 69 / 9e-15 MADS AGL19 AGAMOUS-like 19 (.1) AT5G51860 67 / 6e-14 MADS AGL72 AGAMOUS-like 72, K-box region and MADS-box transcription factor family protein (.1.2) AT5G51870 66 / 2e-13 MADS AGL71 AGAMOUS-like 71 (.1.2.3) AT4G11880 56 / 1e-09 MADS AGL14 AGAMOUS-like 14 (.1) AT4G18960 54 / 5e-09 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT3G58780 54 / 5e-09 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G42830 51 / 7e-08 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT5G60910 49 / 3e-07 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041385 [exp] 220 / 7e-74 AT2G45660 140 / 5e-42 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Lus10006715 [exp] 75 / 2e-16 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10014143 [exp] 66 / 5e-13 AT4G22950 212 / 6e-69 AGAMOUS-like 19 (.1) Lus10008264 [exp] 54 / 1e-08 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10005302 [exp] 53 / 1e-08 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10028215 [exp] 50 / 4e-08 AT3G57230 164 / 4e-52 AGAMOUS-like 16 (.1.2) Lus10031665 [exp] 46 / 2e-06 AT5G62165 179 / 8e-58 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Lus10009481 [exp] 45 / 8e-06 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10007100 [exp] 43 / 3e-05 AT3G57230 226 / 4e-75 AGAMOUS-like 16 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074200 [exp] 130 / 4e-38 AT2G45660 242 / 3e-81 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.002G151700 [exp] 127 / 6e-37 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.001G112400 [exp] 87 / 2e-21 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.003G119700 [exp] 87 / 2e-21 AT4G11880 226 / 4e-75 AGAMOUS-like 14 (.1) Potri.012G133000 [exp] 87 / 2e-21 AT5G62165 218 / 3e-72 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Potri.004G064300 [exp] 54 / 6e-09 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.011G075800 [exp] 53 / 1e-08 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.002G109601 [exp] 50 / 1e-07 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2) Potri.013G104900 [exp] 50 / 1e-07 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.001G284301 [exp] 50 / 2e-07 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region
Representative CDS sequence Show only first row Show all	>Lus10036542 pacid=23174377 polypeptide=Lus10036542 locus=Lus10036542.g ID=Lus10036542.BGIv1.0 annot-version=v1.0 ATGCAGAGCACAATTGAACGTTACAGGAAGCATGTTAAAGACAGTCCAAAACCCAGGCAGCCTTCCGAACAAAACATGCAGATATTGAAGGAGGAAGCAG CAACTATGATGAAGAAGATACATGTTCTTGAACTCTCGAAAAGGAGGCTAATGGGAGAAGATCTTGGATCATGCACTTTAGAAGACCTACAACAGATTGA GCAACAGTTGGAGAGCAGTGTTTGTGTGGTTCGAGCCAGAAAGAATCAAGTGTTCAGGGAACAAATTGAGAAGCTGAAAGAAAAGGGAAGAGAATTGGTG GCTGAGAATGAGAAGCTGTCCAGAAAGTGTGAGATGGAGCAAATGTCGGAAGAACGACAGGAGGAGCAGCAGAAGGGCAACGAGGATGACAATGATGACG AGGAGCAGCAATGGCATCAGAATGAAAATTCAGGAGGAGGAGGAGGAGGAGGGTATGAAGAAGGAAGTCCAGTTTCAGATGTGGAGACTGAACTCTTCAT TGGACTCCCAATTACCAAGCGCTTGCTTCCAAGGAATTGA
AA sequence Show only first row Show all	>Lus10036542 pacid=23174377 polypeptide=Lus10036542 locus=Lus10036542.g ID=Lus10036542.BGIv1.0 annot-version=v1.0 MQSTIERYRKHVKDSPKPRQPSEQNMQILKEEAATMMKKIHVLELSKRRLMGEDLGSCTLEDLQQIEQQLESSVCVVRARKNQVFREQIEKLKEKGRELV AENEKLSRKCEMEQMSEERQEEQQKGNEDDNDDEEQQWHQNENSGGGGGGGYEEGSPVSDVETELFIGLPITKRLLPRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036542 [exp]	0	1
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10041385 [exp]	1.0	0.9358
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036543 [exp]	2.4	0.9016
AT2G41220		GLU2	glutamate synthase 2 (.1)		Lus10003820 [exp]	4.9	0.8756
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10034647 [exp]	6.9	0.8518
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10024857 [exp]	8.4	0.8685
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10027809 [exp]	8.7	0.8692
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10017005 [exp]	12.2	0.8680
AT2G36200			P-loop containing nucleoside t...		Lus10022694 [exp]	13.7	0.8054
AT5G19740			Peptidase M28 family protein (...		Lus10043036 [exp]	14.8	0.8400
AT5G26670			Pectinacetylesterase family pr...		Lus10000269 [exp]	16.9	0.8535

Compare expression of checked genes

Lus10036542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.