Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45660 120 / 3e-36 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT4G11880 120 / 7e-36 MADS AGL14 AGAMOUS-like 14 (.1) AT4G22950 117 / 1e-34 MADS AGL19 AGAMOUS-like 19 (.1) AT5G62165 107 / 3e-31 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT4G09960 102 / 5e-29 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT2G03710 101 / 5e-29 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G58780 100 / 5e-28 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45650 100 / 7e-28 MADS AGL6 AGAMOUS-like 6 (.1) AT5G15800 99 / 1e-27 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT2G42830 99 / 2e-27 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014144 [exp] 120 / 1e-36 AT4G11880 155 / 4e-48 AGAMOUS-like 14 (.1) Lus10006716 [exp] 120 / 1e-36 AT4G11880 160 / 5e-50 AGAMOUS-like 14 (.1) Lus10006715 [exp] 119 / 4e-35 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10014143 [exp] 118 / 6e-35 AT4G22950 212 / 6e-69 AGAMOUS-like 19 (.1) Lus10031665 [exp] 103 / 4e-30 AT5G62165 179 / 8e-58 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Lus10011349 [exp] 99 / 5e-29 AT5G15800 125 / 3e-37 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10002763 [exp] 98 / 1e-28 AT4G18960 133 / 3e-40 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Lus10003125 [exp] 99 / 4e-28 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10028214 [exp] 96 / 6e-28 AT2G14210 117 / 1e-34 ARABIDOPSIS NITRATE REGULATED 1, AGAMOUS-like 44 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074200 [exp] 122 / 9e-37 AT2G45660 242 / 3e-81 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.002G151700 [exp] 121 / 1e-36 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.003G119700 [exp] 119 / 1e-35 AT4G11880 226 / 4e-75 AGAMOUS-like 14 (.1) Potri.001G112400 [exp] 117 / 5e-35 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.012G100200 [exp] 102 / 3e-29 AT1G26310 149 / 2e-44 CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) Potri.019G077200 [exp] 101 / 1e-28 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.012G133000 [exp] 100 / 2e-28 AT5G62165 218 / 3e-72 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Potri.014G074100 [exp] 101 / 3e-28 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.013G104900 [exp] 100 / 6e-28 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.001G058400 [exp] 99 / 2e-27 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10036543 pacid=23174477 polypeptide=Lus10036543 locus=Lus10036543.g ID=Lus10036543.BGIv1.0 annot-version=v1.0 ATGGTTAGGGGGAAGACACAGATGAGGAGGATAGAGAACGCTACAAGCAGGCAAGTGACCTTCTCCAAGAGAAGGAATGGTTTGCTGAAGAAGGCCTTTG AGCTTTCTGTCCTTTGTGATGCTGAAGTTGCGCTCCTTGTCTTTTCCCCTCGTGGCAAACTCTATGAATTTGCTAGCTCCAGGGAGTCTAAAGATCTAAT TCCATAA
AA sequence Show only first row Show all	>Lus10036543 pacid=23174477 polypeptide=Lus10036543 locus=Lus10036543.g ID=Lus10036543.BGIv1.0 annot-version=v1.0 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALLVFSPRGKLYEFASSRESKDLIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036543 [exp]	0	1
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10041385 [exp]	2.0	0.9086
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10003599 [exp]	2.2	0.9111
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036542 [exp]	2.4	0.9016
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10019386 [exp]	5.7	0.8974
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10024857 [exp]	5.9	0.8869
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024748 [exp]	6.0	0.8902
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10017005 [exp]	6.7	0.8954
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Lus10031272 [exp]	7.3	0.8762
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10011646 [exp]	7.5	0.8852
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008040 [exp]	11.2	0.8671

Compare expression of checked genes

Lus10036543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.