Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45670 662 / 0 calcineurin B subunit-related (.1.2) AT1G80950 126 / 1e-31 Phospholipid/glycerol acyltransferase family protein (.1) AT5G60620 51 / 1e-06 GPAT9 glycerol-3-phosphate acyltransferase 9 (.1) AT5G17470 45 / 3e-05 EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041384 [exp] 945 / 0 AT2G45670 647 / 0.0 calcineurin B subunit-related (.1.2) Lus10015853 [exp] 836 / 0 AT2G45670 672 / 0.0 calcineurin B subunit-related (.1.2) Lus10009312 [exp] 834 / 0 AT2G45670 671 / 0.0 calcineurin B subunit-related (.1.2) Lus10003950 [exp] 119 / 8e-29 AT1G80950 492 / 4e-174 Phospholipid/glycerol acyltransferase family protein (.1) Lus10032706 [exp] 96 / 4e-21 AT1G80950 378 / 5e-130 Phospholipid/glycerol acyltransferase family protein (.1) Lus10014443 [exp] 53 / 4e-07 AT5G60620 617 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10023947 [exp] 53 / 5e-07 AT5G60620 655 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10009176 [exp] 42 / 0.0003 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151800 [exp] 758 / 0 AT2G45670 716 / 0.0 calcineurin B subunit-related (.1.2) Potri.014G074300 [exp] 752 / 0 AT2G45670 710 / 0.0 calcineurin B subunit-related (.1.2) Potri.014G042200 [exp] 135 / 1e-34 AT1G80950 506 / 7e-180 Phospholipid/glycerol acyltransferase family protein (.1) Potri.002G134100 [exp] 116 / 5e-28 AT1G80950 476 / 1e-167 Phospholipid/glycerol acyltransferase family protein (.1) Potri.009G143200 [exp] 51 / 1e-06 AT5G60620 679 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.004G183300 [exp] 48 / 1e-05 AT5G60620 686 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.010G080900 [exp] 41 / 0.0007 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.009G102500 [exp] 41 / 0.0009 AT2G15680 246 / 3e-84 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036544 pacid=23174622 polypeptide=Lus10036544 locus=Lus10036544.g ID=Lus10036544.BGIv1.0 annot-version=v1.0 ATGGCCGCCGTCGCCGCCGCCTACGATGATCTCTCCTCCCCTCTTCTCGCCTCCCCTCCTCCTCCTCCGCACATAATCATCTCCATTGACGGCGGCGACC ACAACAACAAATCCTCCCCCTCCCCTGGTCAACCATACTCCAATGGTCATCATCATCATCATCACCAGATTCCTCAATCTAACAACAACAACCCTTTCGA ATTCCTCGGAATTGACCGCCACGTGGATTCCTCCTTGTCCGTCCCTCCGCCTTCAACCGCCGATCCATTCCGCAACGGAACTCCCCGAATCGACGGAATC TACGAGGCACTCAAGATCCTGCTGCTACTCCCGATCATACTCCTCAGATTGCTGCTATTTGGACTCTGTTTGGCTGTCGGCTATCTCGCTACTAAGCTCG CTATCCACGGATGGAAAGACAAAGACAATCCTATGCCCCGATGGCGATCTCGCCTCATGTGGGTCACTAGGTTTTCTGCTCGCGGGATTCTCTTCTCCTT TGGCTACCAGTGGATTCGAAGAAAAGGGAAGCCTGCCCCAAGGGAGATCGCCCCTATCGTTGTATCTAACCATGTGTCGTATATTGAGCCCATTTTTTAC TTCTATGAGATGTGCCCCACCATTGTTGCATCCGAATCACATGATGCTTTGCCCTTTGTTGGAACTATCATCAGAGCTATGCAGGTTATATATGTAAATA GATTCTCACAACCATCAAGGAAGAATGCTGTCAATGAGATAAAGAGAAAAGGTGCTTGCGATAGATTTCCGCGAGTACTGTTGTTTCCCGAGGGAACGAC TTCCAATGGAAGAGTTCTTCTGTCATTTCAACTCGGTGCGTTCCTCCCTAATTATGCGATCCAACCTGTGGTTGTTCGGTATCCTCATGTGCATTTTGAC CAATCTTGGGGCAATATTTCATTAGCATTGCTTATGTTCAGAATGTTCAGCCAGTTTCACAATTACCTCGAGGTGGAGTATCTACCGATTGTTTCCCCCC TTGACAATTGCAAAGAAAATCCTGCACATTTTTCTAAGAGAACAAGTAATGCTATGGCAACTGCACTAAATGTCTTGCAAACATTCCATTCCTATGGAGA CGTGATGCTTCTCATGAGAGCAGCTGAGGCTGGCCAGGAGAATCCGCGAAGTTTTATGGTTGAAATGGCAAAGGTGGAATCGTTATTCCATATTCGCAGT TTGGAAGCTATGGATTTTCTTGAAAAGTTTCTTTCCATGAATCCAGACTCCAGCGGTCGTGTTAAGTTCTATGATTTTTTGAGGGCTCATAGACTCAGAC CTTGCGCACTTTCAGAAGAGGTATTTGCATTCCTCGATGTAGAAAAGAGTGGTTCAATTACATTCAAGCAGTTCTTGTATGGATCATTGCATGTCATGAA ACAACCGCAATTCCGGCAAACGTGTGAACTAGCTTTTAGTGAATGTGATGTTAAGGGAGACCATGAAATCTCAGAACACGAGTTCGGAGATGTCATCAGA CTCACAATTCCAGATTTAGACAAAGATGAGGTTCATGAATTGTTCAAGTTGTTTGACGTGGATGCGAAAGGTACAGTGAGCAAGGATGACTTCAACTCCT CCTTGCGAAGGAACCCGTTGCTCATAGCTCTATTTTCGGAGTGTTTGGCTCGTAGAGATACCACAGAGGATTCTGATTCAATGCTGGAAGAGTTTGTGTG A
AA sequence Show only first row Show all	>Lus10036544 pacid=23174622 polypeptide=Lus10036544 locus=Lus10036544.g ID=Lus10036544.BGIv1.0 annot-version=v1.0 MAAVAAAYDDLSSPLLASPPPPPHIIISIDGGDHNNKSSPSPGQPYSNGHHHHHHQIPQSNNNNPFEFLGIDRHVDSSLSVPPPSTADPFRNGTPRIDGI YEALKILLLLPIILLRLLLFGLCLAVGYLATKLAIHGWKDKDNPMPRWRSRLMWVTRFSARGILFSFGYQWIRRKGKPAPREIAPIVVSNHVSYIEPIFY FYEMCPTIVASESHDALPFVGTIIRAMQVIYVNRFSQPSRKNAVNEIKRKGACDRFPRVLLFPEGTTSNGRVLLSFQLGAFLPNYAIQPVVVRYPHVHFD QSWGNISLALLMFRMFSQFHNYLEVEYLPIVSPLDNCKENPAHFSKRTSNAMATALNVLQTFHSYGDVMLLMRAAEAGQENPRSFMVEMAKVESLFHIRS LEAMDFLEKFLSMNPDSSGRVKFYDFLRAHRLRPCALSEEVFAFLDVEKSGSITFKQFLYGSLHVMKQPQFRQTCELAFSECDVKGDHEISEHEFGDVIR LTIPDLDKDEVHELFKLFDVDAKGTVSKDDFNSSLRRNPLLIALFSECLARRDTTEDSDSMLEEFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45670			calcineurin B subunit-related ...		Lus10036544 [exp]	0	1
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Lus10026430 [exp]	7.3	0.8661
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10038088 [exp]	8.4	0.8756
AT5G47390	MYB		myb-like transcription factor ...		Lus10004248 [exp]	12.5	0.8659
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Lus10034123 [exp]	13.0	0.8631
AT3G53140			O-methyltransferase family pro...		Lus10023892 [exp]	17.4	0.8690
AT4G19110			Protein kinase superfamily pro...		Lus10033278 [exp]	22.0	0.8434
AT4G34150			Calcium-dependent lipid-bindin...		Lus10019826 [exp]	23.8	0.8391
					Lus10025501 [exp]	25.8	0.8629
AT3G02740			Eukaryotic aspartyl protease f...		Lus10036430 [exp]	30.0	0.8227
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Lus10024991 [exp]	37.5	0.8004

Compare expression of checked genes

Lus10036544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.