Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31010 439 / 7e-154 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) AT5G54890 291 / 1e-96 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT2G20020 258 / 1e-79 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT1G23400 233 / 1e-71 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 63 / 2e-10 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT3G18390 50 / 2e-06 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G14510 42 / 0.0005 ATCFM3B CRM family member 3B (.1) AT3G25440 41 / 0.0008 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041383 [exp] 673 / 0 AT4G31010 526 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10040080 [exp] 290 / 2e-95 AT5G54890 484 / 2e-172 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10012974 [exp] 250 / 2e-77 AT2G20020 544 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10011119 [exp] 236 / 3e-72 AT2G20020 598 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10043237 [exp] 233 / 4e-71 AT2G20020 605 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10029134 [exp] 231 / 1e-70 AT1G23400 712 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10019623 [exp] 220 / 4e-70 AT5G54890 318 / 4e-109 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10013029 [exp] 224 / 1e-66 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10034952 [exp] 157 / 4e-44 AT2G20020 274 / 2e-85 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074400 [exp] 482 / 8e-171 AT4G31010 501 / 1e-177 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Potri.001G423800 [exp] 299 / 2e-99 AT5G54890 514 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G042500 [exp] 227 / 2e-69 AT1G23400 655 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.006G163100 [exp] 228 / 3e-68 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 60 / 1e-09 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.012G056100 [exp] 54 / 2e-07 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10036545 pacid=23174353 polypeptide=Lus10036545 locus=Lus10036545.g ID=Lus10036545.BGIv1.0 annot-version=v1.0 ATGTACCTCCGGTCACTCGTCGCCGGCCGGAACAACCCCCCGCCGCATTTCTCGTTCACCTTGGCGTTCCTGTCGCGCCACCTATGTTCCTCATCCGCCG CCTCTTCGAAGCTTCGCGATTACTACGCCTTCGATCCTCCGTCTTCGCTCTCCCCCGAGAATCGACCGAGCTATGACAATCAAGATCCTCCGGCTCCAGC TCCTCCGGCGAAAAAGCAGAAAGAGCGGTACCGGCCGCCGTCTTCTCTAAACCAGTCCAGAAAGCCGATGCACTCCGACCTTCCGTTTGATTTTCGGTAC AGCTACTCGGAGAGCAGCCAGTCGGTGAGACCAATCGGCCTCAGGGAGCCGAAATACTCCCCTTTCGGCCCACGACGGCTTGACCGGAAATGGACCGGAG TTTGCGCCCCTGCGGTTGATCCGAAAGTGAAGTCGGTCGACGCCCGCCCCTGCGGGAGAGATGGCTTCACTCACAACATGCTGAATGATGTGCATAACAA TTGGAGACATGCTGAAGCAGTTAGGATCAAGTGTCTAGGTGTTCCCACTGTTGACATGAAGAATGTTTGTGCTCAGCTTGAGGATAAAACATTTGGCAAG ATCATTCACAGACATGGTGGTCAGCTGGTGTTGTATAGAGGTCGAAATTATAATCCCAAGAAAAGGCCTGCTGTTCCATTGATGCTGTGGAGGCCTCACG AGCCTGTATATCCGAAGCTTATCAAAACTACGATTGAAGGGTTGAGTATTGATGAAACAAAGGAAATGAGAAAGAGGGGTCTGGCTGTTCCTGCACTCAC AAGACTTGCCAAGAATGGTTACTATGGCAGTCTTGTACCCATGGTGAGAGATGCTTTTATTCTAAGTGAGCTGGTGCGCATAGACTGCCAAGGACTTGAG AGGAGCGATTACAAGAAAATAGGCTGCAAACTAAGGGACTTGGTTCCTTGCATACTGGTGACATTTGAGAAGGAGCAGATTGTGGTGTGGAGAGGAACAG ACTACAAGCCACCAGAAGATGGATATCTATATACCGATAGGGAATTCTTCGATGATCCTGAGGGAGACGGGGCTTTTGCTGAAGATGAACATTGCTGCTC AGACAAGTAA
AA sequence Show only first row Show all	>Lus10036545 pacid=23174353 polypeptide=Lus10036545 locus=Lus10036545.g ID=Lus10036545.BGIv1.0 annot-version=v1.0 MYLRSLVAGRNNPPPHFSFTLAFLSRHLCSSSAASSKLRDYYAFDPPSSLSPENRPSYDNQDPPAPAPPAKKQKERYRPPSSLNQSRKPMHSDLPFDFRY SYSESSQSVRPIGLREPKYSPFGPRRLDRKWTGVCAPAVDPKVKSVDARPCGRDGFTHNMLNDVHNNWRHAEAVRIKCLGVPTVDMKNVCAQLEDKTFGK IIHRHGGQLVLYRGRNYNPKKRPAVPLMLWRPHEPVYPKLIKTTIEGLSIDETKEMRKRGLAVPALTRLAKNGYYGSLVPMVRDAFILSELVRIDCQGLE RSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGTDYKPPEDGYLYTDREFFDDPEGDGAFAEDEHCCSDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31010			RNA-binding CRS1 / YhbY (CRM) ...		Lus10036545 [exp]	0	1
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10042574 [exp]	5.8	0.8162
AT5G22040			unknown protein		Lus10000457 [exp]	7.7	0.7894
AT4G02010			Protein kinase superfamily pro...		Lus10037526 [exp]	10.4	0.8222
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	10.5	0.7933
AT4G10925			Nuclear transport factor 2 (NT...		Lus10023064 [exp]	13.5	0.7642
AT1G12530			unknown protein		Lus10006705 [exp]	20.0	0.7539
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020996 [exp]	23.1	0.7870
AT2G40980			Protein kinase superfamily pro...		Lus10031009 [exp]	28.5	0.7776
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10019481 [exp]	31.4	0.7804
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	31.5	0.7885

Compare expression of checked genes

Lus10036545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.