Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66430 243 / 9e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G36470 239 / 4e-76 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19640 231 / 1e-72 JMT jasmonic acid carboxyl methyltransferase (.1) AT3G11480 229 / 3e-72 BSMT1, ATBSMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04380 229 / 9e-72 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04370 227 / 5e-71 NAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G38020 218 / 1e-67 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G14060 207 / 1e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G21950 204 / 1e-62 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G68040 185 / 4e-55 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036550 [exp] 630 / 0 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036548 [exp] 587 / 0 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041380 [exp] 413 / 4e-144 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024671 [exp] 403 / 2e-139 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025993 [exp] 373 / 6e-127 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10041776 [exp] 243 / 2e-77 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024271 [exp] 191 / 1e-57 AT1G19640 315 / 2e-105 jasmonic acid carboxyl methyltransferase (.1) Lus10043177 [exp] 169 / 1e-48 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10021802 [exp] 152 / 5e-43 AT1G68040 203 / 6e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021300 [exp] 366 / 1e-125 AT3G11480 318 / 1e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022002 [exp] 277 / 9e-91 AT3G11480 309 / 3e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022400 [exp] 272 / 6e-89 AT3G11480 311 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022000 [exp] 259 / 7e-84 AT3G11480 300 / 7e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G230100 [exp] 251 / 1e-80 AT1G19640 389 / 1e-134 jasmonic acid carboxyl methyltransferase (.1) Potri.005G045900 [exp] 242 / 4e-77 AT1G19640 271 / 3e-88 jasmonic acid carboxyl methyltransferase (.1) Potri.007G021400 [exp] 231 / 7e-73 AT4G36470 469 / 4e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022402 [exp] 231 / 8e-73 AT3G11480 261 / 1e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G104800 [exp] 211 / 2e-65 AT1G68040 328 / 4e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G041900 [exp] 212 / 6e-65 AT1G68040 275 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03492 [flax] [poplar] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036547 pacid=23174675 polypeptide=Lus10036547 locus=Lus10036547.g ID=Lus10036547.BGIv1.0 annot-version=v1.0 ATGAAGGTAGATGAGATGTTACGTATGAATAGCGGAACTGGCGAGACAAGCTACGCTACCAACTCCTTCCTTCAGAAAAAGGCCATATCAATGACTCGGC AAATAACAGAGGAGGCGATTACGGGACTAGTACTCGGCACCTCAAGCTTCCCGAAAGGAAGTTTGTCCATTGCGGATTTGGGATGTGCTTCAGGACCCAA CACTTTCTTCACTGTGTCGGAGCTTGTTAAGTCTGTCGTCAGGATTTCGAGAAACCTAGGCCGAGAACCTCCTAAAGAGTTTCAGGTTTTCCTGAACGAC CTCCCCGGAAACGACTTTAATAGCATCTTCACCTCTGTGCCAAAATTCAAGAAACAAATGAAGGAAGAACTAACGGTGGAGGCTGGTGAATTTTCTATTT TCGTCAACGGAGTCCCTGGTTCTTTCTACGGGAGATTGTTCCCGACGAAAAGTCTTCACTTTGTCTTCTCTTCCTACAGTCTGCATTGGCTTTCTCAGGT TCCTGATGGACTTGTTGAGCTGAACAAAGGGAATGTTTCATATGGCATCAGCAGCTCTCGTGGCGTGTTTGATTTGTACTCGGGGCAATTTAGGAAGGAT TTCGCCGAGTTCTTGAGGTGTCGAGCTTTGGAGTTGGTCTCTGGAGGGAAAACGGTGTTGACATTTCCTGGCAGGAGGAATGACGACTGTTCGAGGTGTT TGTACATCTTGGATCCCTTGTGCATTGCTCTTAACGAAATGGCATCTGAGGGTTTGATAGACACAGAAAAGTTGGCTTCGTTCAATATACCAGCTTATTT GGCATCTCCGATGGAAGTTGAAGCCGAAGTTCAGAAACAGAGCTCCTTCACTATAGATTGCTTGGAGGACAAGGAAATGAGCTGGGATCCTTACGAAGGT GAAGCAAACCTTCCAGAATCCTTAAAAGACTCTGGATCTGACATTGCAAAATGTATGAGGGCAGTGGTAGAGCCATTGTTGGCCTGCCATTTGGATCTCC GGATGGAAATCATCGACGAAGCATTCCAACGGTATGGCATAATAGTCTCGGAGCGGATCACCTCCGGCTATAAATTTACTTACGCCAATCTAACCATCTC ACTCACTAAGCTCTAA
AA sequence Show only first row Show all	>Lus10036547 pacid=23174675 polypeptide=Lus10036547 locus=Lus10036547.g ID=Lus10036547.BGIv1.0 annot-version=v1.0 MKVDEMLRMNSGTGETSYATNSFLQKKAISMTRQITEEAITGLVLGTSSFPKGSLSIADLGCASGPNTFFTVSELVKSVVRISRNLGREPPKEFQVFLND LPGNDFNSIFTSVPKFKKQMKEELTVEAGEFSIFVNGVPGSFYGRLFPTKSLHFVFSSYSLHWLSQVPDGLVELNKGNVSYGISSSRGVFDLYSGQFRKD FAEFLRCRALELVSGGKTVLTFPGRRNDDCSRCLYILDPLCIALNEMASEGLIDTEKLASFNIPAYLASPMEVEAEVQKQSSFTIDCLEDKEMSWDPYEG EANLPESLKDSGSDIAKCMRAVVEPLLACHLDLRMEIIDEAFQRYGIIVSERITSGYKFTYANLTISLTKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10036547 [exp]	0	1
AT3G46140			Protein kinase superfamily pro...		Lus10039141 [exp]	1.0	0.9174
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10040738 [exp]	8.8	0.7844
AT1G08790			Protein of unknown function (D...		Lus10006560 [exp]	14.0	0.8619
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Lus10034524 [exp]	19.1	0.8598
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006796 [exp]	22.2	0.7190
AT1G28030			2-oxoglutarate (2OG) and Fe(II...		Lus10037429 [exp]	22.7	0.7809
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10031607 [exp]	23.3	0.8584
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10027432 [exp]	24.1	0.6932
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10029016 [exp]	24.6	0.8510
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019872 [exp]	26.2	0.8509

Compare expression of checked genes

Lus10036547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.