Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66430 239 / 4e-73 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19640 237 / 4e-72 JMT jasmonic acid carboxyl methyltransferase (.1) AT4G36470 236 / 6e-72 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04370 230 / 2e-69 NAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G11480 229 / 3e-69 BSMT1, ATBSMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04380 223 / 7e-67 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38020 218 / 3e-65 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G21950 217 / 1e-64 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G14060 210 / 4e-62 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G68040 184 / 3e-52 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036550 [exp] 619 / 0 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 567 / 0 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041380 [exp] 427 / 8e-146 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024671 [exp] 409 / 3e-138 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025993 [exp] 388 / 2e-129 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10041776 [exp] 235 / 2e-71 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024271 [exp] 185 / 6e-53 AT1G19640 315 / 2e-105 jasmonic acid carboxyl methyltransferase (.1) Lus10043177 [exp] 172 / 8e-48 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10021802 [exp] 149 / 4e-40 AT1G68040 203 / 6e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021300 [exp] 369 / 2e-123 AT3G11480 318 / 1e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022002 [exp] 275 / 1e-86 AT3G11480 309 / 3e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022400 [exp] 274 / 2e-86 AT3G11480 311 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022000 [exp] 264 / 1e-82 AT3G11480 300 / 7e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G230100 [exp] 248 / 1e-76 AT1G19640 389 / 1e-134 jasmonic acid carboxyl methyltransferase (.1) Potri.005G045900 [exp] 248 / 1e-76 AT1G19640 271 / 3e-88 jasmonic acid carboxyl methyltransferase (.1) Potri.007G021400 [exp] 244 / 4e-75 AT4G36470 469 / 4e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022402 [exp] 222 / 1e-66 AT3G11480 261 / 1e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G104800 [exp] 198 / 6e-58 AT1G68040 328 / 4e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G041900 [exp] 198 / 2e-57 AT1G68040 275 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03492 [flax] [poplar] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036548 pacid=23174656 polypeptide=Lus10036548 locus=Lus10036548.g ID=Lus10036548.BGIv1.0 annot-version=v1.0 ATGAAAGACGGAGGCTGCAGGTGGCCAATTAAGTACATGAGGGCGATGGTCGAACCACCCTTGGTTCAAAAGTTTGGTTCCATGAGGGAAGTCATTGACG AGGCTTTCGACGGATATCACGGATTAATAGACATGGAGAGACTGAACTCGTTTAATATCCCAAATTACTTTCCATCAATAACAGAAATCGAAGGTGAACC CCAGGAACAAGACTGCTTCACCATTGACCGCATAATGGTTAAGGAAGCGAATTGGAATCCGTACGAAGGGGAGGAGGAATCGGACATCCCAGAAGCAATG AAAGACGTCGGCTACATCGTGTCCAAGTACCTTAGGCCCATGGTCGAACCACTCTTGGTTCGGCAGTTTGGTTCCACGAGAGAAGTCATCGACGAGGTTT TCGACAGATATTGCTTCATTGTGTCCAAATGGATGACTATGATAAAAACTAAACACACTGAAAGGCAGAGAGATGCTAGAGCTTGGTCGACGACAGAGAG GACGGAAAACAGAGAGGTGGGAAGTCATGAAGGCGGACGAGGTGCTTCATATGAATGGCGGCACTGGAGATCCCAGCTACGCTATGAACTCCATGTATAT ACATTGTTTCTCTCACACTTATACACCGCATCCTGCGCTTCACTTTTCGATATGGGAGGGCTTGAACCATCATGTCCCGTCAAACTCACGTCTAACCGAA TAAAATTAGTAATGGCAGCTGAGAGATGCAAGAGGCCAGACTCAGAAGCAGAGATCATGAAGGTAGATGAGATGCTACATATGAATGGCGGAACTGGCGA GACAAGTTACGCTACCAACTCCTTCTTCCAGCAAAAGGCCATATCAATGACTAGGCCAATAACCGAGAAAGCGATTACAGAACTGGTACTCTGCAGCTCA ACCTTCCCGAAAGGAAGTCTAGCCATTGCGGATTTGGGATGTGCTTCAGGACCCAACACTTTTTTCACCGTGTCAGTGCTTGTCAAGTCCTTCGTCAGGA TTTCGAAAGACATAGGCCGAGAACCACCTGAAGAGTTTCAGGTTTTCCTGAATGACCTTCCTGGAAACGACTTTAACAGCATCTTCACCTCTATGCCAAA TTTCAAGAAACAAATGAAGGAAGAACTAATGGCGGCTGGTGAGTTTTCTATGTTCATCAACGGAGTCCCCGGTTCCTTCTACGGAAGGCTGTTCCGTGCG GAGAGTCTTCACTTTGTTCACTCTTCCTACGGCCTGCATTGGCTCTCTCAGGTTCCTGATGGACTTGTTGAGCTGAACAAAGGGAATGTTTCATATGGTA GCAGCGGCCCTCGTGGCGTGTTTGATTTGTATTCGGGGCAATTTCGGAAGGACTTCGCGGCGTTCTTGAGCTGTCGAGCTCTGGAGTTGGTCCCTGGTGG GAAAATGGTGTTGACATTTCTGGGGAGGAGGAATGACGACAACTCCAGGTGTTGCTATATTTTGGAGCTCATGTCTATTGTACTTAACCAAATGGCATCT GAGGGTTTAATAGACATGGAAAGGTTGGGATCGTTCAATCTACCCATTTACATGCCGTCTCCGATGGAAGTTGAGACCGAAGTTCATAAACAGGGCTCCT TCACCATAGATCGGCTGGAGGTTAAGGAAACGAGCTGGGATCCCTACGAAGGTGAAGCCAATCTTCCAGAAACCTTGAAAGACTCGGGTTCTCACGTGGC AGAGTATATGAGGGCAGTGCTAGAGCCGTTGTTGGTCCGCCTTTTGGATCTTCGGACGCAAATTGTCGATGAGGCATTCCGACGGTATGGCGTAATTGTT TATGAGCGGATGGTCTATGATTATAAAACTGGGTACGCCAACGTAATTGTGTCACTCACGAGGCTCTAA
AA sequence Show only first row Show all	>Lus10036548 pacid=23174656 polypeptide=Lus10036548 locus=Lus10036548.g ID=Lus10036548.BGIv1.0 annot-version=v1.0 MKDGGCRWPIKYMRAMVEPPLVQKFGSMREVIDEAFDGYHGLIDMERLNSFNIPNYFPSITEIEGEPQEQDCFTIDRIMVKEANWNPYEGEEESDIPEAM KDVGYIVSKYLRPMVEPLLVRQFGSTREVIDEVFDRYCFIVSKWMTMIKTKHTERQRDARAWSTTERTENREVGSHEGGRGASYEWRHWRSQLRYELHVY TLFLSHLYTASCASLFDMGGLEPSCPVKLTSNRIKLVMAAERCKRPDSEAEIMKVDEMLHMNGGTGETSYATNSFFQQKAISMTRPITEKAITELVLCSS TFPKGSLAIADLGCASGPNTFFTVSVLVKSFVRISKDIGREPPEEFQVFLNDLPGNDFNSIFTSMPNFKKQMKEELMAAGEFSMFINGVPGSFYGRLFRA ESLHFVHSSYGLHWLSQVPDGLVELNKGNVSYGSSGPRGVFDLYSGQFRKDFAAFLSCRALELVPGGKMVLTFLGRRNDDNSRCCYILELMSIVLNQMAS EGLIDMERLGSFNLPIYMPSPMEVETEVHKQGSFTIDRLEVKETSWDPYEGEANLPETLKDSGSHVAEYMRAVLEPLLVRLLDLRTQIVDEAFRRYGVIV YERMVYDYKTGYANVIVSLTRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10036548 [exp]	0	1
AT3G30380			alpha/beta-Hydrolases superfam...		Lus10035148 [exp]	2.0	0.7547
AT5G11260	bZIP	TED5, HY5	REVERSAL OF THE DET PHENOTYPE ...		Lus10002900 [exp]	4.5	0.7184
AT3G06890			unknown protein		Lus10037501 [exp]	11.2	0.7802
AT3G54880			unknown protein		Lus10013824 [exp]	24.5	0.6674
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10039343 [exp]	40.0	0.6713
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Lus10026164 [exp]	43.9	0.6420
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10008522 [exp]	44.4	0.6445
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10019934 [exp]	50.3	0.6728
AT5G60660		PIP2F, PIP2;4	plasma membrane intrinsic prot...		Lus10026504 [exp]	93.1	0.6220
AT1G16350			Aldolase-type TIM barrel famil...		Lus10000276 [exp]	200.0	0.5907

Compare expression of checked genes

Lus10036548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.