Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45690 387 / 2e-133 PEX16, SSE1, ATPEX16 SHRUNKEN SEED 1, ARABIDOPSIS PEROXIN 16, shrunken seed protein (SSE1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041379 [exp] 673 / 0 AT2G45690 386 / 9e-133 SHRUNKEN SEED 1, ARABIDOPSIS PEROXIN 16, shrunken seed protein (SSE1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G152300 [exp] 469 / 7e-166 AT2G45690 450 / 5e-159 SHRUNKEN SEED 1, ARABIDOPSIS PEROXIN 16, shrunken seed protein (SSE1) (.1) Potri.014G078300 [exp] 465 / 4e-164 AT2G45690 450 / 6e-159 SHRUNKEN SEED 1, ARABIDOPSIS PEROXIN 16, shrunken seed protein (SSE1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08610 [flax] [poplar] Pex16 Peroxisomal membrane protein (Pex16)
Representative CDS sequence Show only first row Show all	>Lus10036549 pacid=23174401 polypeptide=Lus10036549 locus=Lus10036549.g ID=Lus10036549.BGIv1.0 annot-version=v1.0 ATGACTGGTTCAGAATGTAAGGTGAAAGTGAAAGTAGAAGCGGTGGCGACAGATCGAGTAAATGATGAACCGGCGGCGGCAACTACAATCTCCATCTGTC ACCGACGACTGTTATCATGGTGGCGGAAGCTGTGCAATAAGACTCCACCTCCTCTTAGACTGGTTGTGTTCCGATCTACGGTTAAGGGAGTAACGTGGCT GCTACCTGAAAGGTTTTCCGAGTCAGAGATTGGGCCAGAAGCAGTAACTGCTGTACTGGGTATAATCACTGCTCTCAATGAGCATATTATCGATACAACT CCAAGTCAGATACATGCTGCTGGCTCTGTAAAGCCTCGATCTTTTCCTTATCCACTATGCATATCCATGATAAAGGAGCTGGAGACATTGGTTGAAGTTG CCTCACAACAATATTTTGGTGATGATAAAAAGTGGAACTTCATTGCTCTTACAGAAGCCACTAAGGTGGTAGTTAGGTTGGCATTGTTCCGGAACAGTGG ATATAAGATGCTTTTGCAAGGAGGAGAGATACCAAATGTTGAAAATCCTACAGATCTCTCAAGAACTTCCAAGCCTGGAAACCACAACGAGCCTGGCCAG TTTCCGAATATGAATGGGAGAAGCCCAGGGACTGGGCAAGGCAAGGCTTTGTCTGCATTGAGCAGATTTCGAGAAAATGCCCGGACTTTAGCTGAGCCAG ATTGGTTACGCAGGGTTCATCATCAACAATCTATTATCGAGCCCCCTGCTCTAGTGGTTCAGGTGCCATCACTTTCAAAGATATTGTCCGAAAGAGGCGC TTCTGGGGCACTATTTGTTCTAGGGGAGGCACTCTTCATCACAAGACCCCTGATTTATGTATTGTTAATCAGGAAGTACGGAGTTCGTTCATGGGTCCCT TGGTTTGTTTCTCTGGCTGTTGATGTTATCGGGGTAGGCTTCGTTACACCTCTATCTAAACTGCAGTTTAGAGAAAGAGATCAGCAGATTCATCTTAACG ATTCCGAAAAGCACGAGCTAAGAAGGCGGAAATTGCTATGGGCATTTTACCTGATGAGGGATCCCTTCTTCAGCAAGTATACAAGGGAGAGACTTGACAA GACTGAGAAAACACTAGAGCCAGTACCTCTAGTAGGTGTCCTGACAGGCTGTAACTGGTTTCTCCCCTGCGCAGGGAAACTCGTTGAGCTTATTTGTGGA GCTCAAACCCGATACACTTACATGTCTGGTTCTTGA
AA sequence Show only first row Show all	>Lus10036549 pacid=23174401 polypeptide=Lus10036549 locus=Lus10036549.g ID=Lus10036549.BGIv1.0 annot-version=v1.0 MTGSECKVKVKVEAVATDRVNDEPAAATTISICHRRLLSWWRKLCNKTPPPLRLVVFRSTVKGVTWLLPERFSESEIGPEAVTAVLGIITALNEHIIDTT PSQIHAAGSVKPRSFPYPLCISMIKELETLVEVASQQYFGDDKKWNFIALTEATKVVVRLALFRNSGYKMLLQGGEIPNVENPTDLSRTSKPGNHNEPGQ FPNMNGRSPGTGQGKALSALSRFRENARTLAEPDWLRRVHHQQSIIEPPALVVQVPSLSKILSERGASGALFVLGEALFITRPLIYVLLIRKYGVRSWVP WFVSLAVDVIGVGFVTPLSKLQFRERDQQIHLNDSEKHELRRRKLLWAFYLMRDPFFSKYTRERLDKTEKTLEPVPLVGVLTGCNWFLPCAGKLVELICG AQTRYTYMSGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10036549 [exp]	0	1
AT1G65320			Cystathionine beta-synthase (C...		Lus10037535 [exp]	4.0	0.8504
AT5G58030			Transport protein particle (TR...		Lus10003350 [exp]	5.7	0.8511
AT1G06400		ARA2, AtRABA1a,...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10029789 [exp]	7.3	0.8481
AT5G52990			SNARE-like superfamily protein...		Lus10022397 [exp]	8.7	0.8067
AT1G01910			P-loop containing nucleoside t...		Lus10036552 [exp]	13.0	0.8092
AT5G19670			Exostosin family protein (.1)		Lus10034951 [exp]	13.4	0.8092
AT1G53400			Ubiquitin domain-containing pr...		Lus10005423 [exp]	14.7	0.7933
AT1G16240		ATSYP51, SYP51	syntaxin of plants 51 (.1.2.3)		Lus10002446 [exp]	15.3	0.8013
AT2G03120		ATSPP	signal peptide peptidase (.1)		Lus10037594 [exp]	16.2	0.7586
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10027269 [exp]	16.9	0.7854

Compare expression of checked genes

Lus10036549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.