Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11480 249 / 8e-80 BSMT1, ATBSMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G66430 243 / 8e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04370 243 / 3e-77 NAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G36470 242 / 4e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38020 233 / 9e-74 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04380 229 / 8e-72 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19640 229 / 1e-71 JMT jasmonic acid carboxyl methyltransferase (.1) AT2G14060 224 / 3e-70 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G21950 221 / 3e-69 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G68040 182 / 4e-54 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036548 [exp] 641 / 0 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 630 / 0 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041380 [exp] 412 / 6e-144 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024671 [exp] 403 / 2e-139 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025993 [exp] 377 / 9e-129 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10041776 [exp] 242 / 6e-77 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024271 [exp] 189 / 6e-57 AT1G19640 315 / 2e-105 jasmonic acid carboxyl methyltransferase (.1) Lus10043177 [exp] 167 / 7e-48 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10021802 [exp] 150 / 2e-42 AT1G68040 203 / 6e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021300 [exp] 379 / 9e-131 AT3G11480 318 / 1e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022002 [exp] 286 / 3e-94 AT3G11480 309 / 3e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022400 [exp] 282 / 1e-92 AT3G11480 311 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022000 [exp] 271 / 2e-88 AT3G11480 300 / 7e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G045900 [exp] 252 / 4e-81 AT1G19640 271 / 3e-88 jasmonic acid carboxyl methyltransferase (.1) Potri.007G021400 [exp] 239 / 4e-76 AT4G36470 469 / 4e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G230100 [exp] 237 / 4e-75 AT1G19640 389 / 1e-134 jasmonic acid carboxyl methyltransferase (.1) Potri.019G022402 [exp] 226 / 4e-71 AT3G11480 261 / 1e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G104800 [exp] 209 / 1e-64 AT1G68040 328 / 4e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G049900 [exp] 206 / 4e-63 AT1G15125 309 / 1e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03492 [flax] [poplar] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036550 pacid=23174692 polypeptide=Lus10036550 locus=Lus10036550.g ID=Lus10036550.BGIv1.0 annot-version=v1.0 ATGAAGGTGGATGAGATGCTATGTATGAATGGCGGAACTGGAGAGACAAGCTATGCTACCAACTCCTTCCTTCAGCAAAAGGCCATATCAATGACTAGGC CAGTAACAGAGGAAGCGATAGCGGGACTAGTACTCTGCAAGTCAACTTTCCCGAAAGGAAGCCTAGCCATTGCGGATTTGGGATGTGCTTCAGGACCCAA CACGTTCATCTCCGTGTCAGAGCTTGTCAAGTCCATCGTCAGGATTTCGAAAGACATAGGCCGAGAACCACCTGAAGAGTTTCAGGTTTTCCTGAATGAC CTTCCTGGAAACGACTTTAACAGCATCTTCACCTCTATGCCAAATTTCAAGAAACAAATGAAGGAAGAACTAATGGCGGCTGGTGAGTTGTCTATGTTCA TCAACGGAGTCCCCGGTTCTTTCTACGGAAGGCTGTTCCGTGCGGAGAGTCTTCACTTTGTTCACTCTTCCTACGGCCTGCATTGGCTCTCTCAGGTTCC TGATGGACTTGTTGAGCTGAACAAAGGGAATGTTTCATATGGTAGCAGCGGCCCTCGTGGCGTGTTTGATTTGTATTCGGGGCAATTTCGGAAGGATTTC ACCCTGTTCTTGAGCTGTCGAGCTCAGGAGTTGGTCCCTGGTGGGAAAATGGTGATGACATTTCCTGGCAGGAGGAATGACGACGATTCGAGGTGTTTGT ATATCTTGGATCCCATGTCCATTGCTCTTAACCAAATGGCATCTGAGGGTATGATAGACATGGAAAGGTTGGAGTCGTTGAATATACCAGCTTACCTGGC ATCTCCGATGGAAGTTGAAGCCGAAGTTCAGAAACAAGGCTCCTTCACCATAGATTGCTTGGAGGATATGGAAAGGAGCTGGGATCCCTACGAAGGTGAA GCCAACCTTCCAGAAACCCTAAAGGACTCTGGCTGTAACGTGGCCAAATGTATGAGGGCAGTGCTGGAGCCATTGTTGGCCACCCATTTGGATCTACGAC CGCAAATCGTCGAGGAGGCATTCCTGCGGTACGGTGCAATTGTTTCGGAGCGAATCATCTCTGGCTATAAATTTACCTACGCCAATATTACCGTCTCACT CACCAAGCGTAACTAA
AA sequence Show only first row Show all	>Lus10036550 pacid=23174692 polypeptide=Lus10036550 locus=Lus10036550.g ID=Lus10036550.BGIv1.0 annot-version=v1.0 MKVDEMLCMNGGTGETSYATNSFLQQKAISMTRPVTEEAIAGLVLCKSTFPKGSLAIADLGCASGPNTFISVSELVKSIVRISKDIGREPPEEFQVFLND LPGNDFNSIFTSMPNFKKQMKEELMAAGELSMFINGVPGSFYGRLFRAESLHFVHSSYGLHWLSQVPDGLVELNKGNVSYGSSGPRGVFDLYSGQFRKDF TLFLSCRAQELVPGGKMVMTFPGRRNDDDSRCLYILDPMSIALNQMASEGMIDMERLESLNIPAYLASPMEVEAEVQKQGSFTIDCLEDMERSWDPYEGE ANLPETLKDSGCNVAKCMRAVLEPLLATHLDLRPQIVEEAFLRYGAIVSERIISGYKFTYANITVSLTKRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10036550 [exp]	0	1
					Lus10019190 [exp]	5.2	0.9254
AT3G46540			ENTH/VHS family protein (.1)		Lus10023415 [exp]	5.3	0.9274
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	10.6	0.9363
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10014036 [exp]	15.6	0.9077
					Lus10026417 [exp]	21.2	0.8913
AT2G17080			Arabidopsis protein of unknown...		Lus10025124 [exp]	22.5	0.9231
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	25.1	0.9232
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10007100 [exp]	26.2	0.8430
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10006827 [exp]	28.3	0.8803
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10021227 [exp]	30.3	0.8926

Compare expression of checked genes

Lus10036550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.