Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61113 152 / 7e-50 Ubiquitin related modifier 1 (.1) AT2G45695 142 / 1e-45 Ubiquitin related modifier 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041378 [exp] 170 / 8e-57 AT3G61113 179 / 2e-60 Ubiquitin related modifier 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G078200 [exp] 143 / 6e-46 AT3G61113 141 / 2e-45 Ubiquitin related modifier 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF09138 [flax] [poplar] Urm1 Urm1 (Ubiquitin related modifier)
Representative CDS sequence Show only first row Show all	>Lus10036551 pacid=23174440 polypeptide=Lus10036551 locus=Lus10036551.g ID=Lus10036551.BGIv1.0 annot-version=v1.0 ATGCAACTCACTCTTGAATTCGGTGGAGGGCTGGAGCTTCTTTGTGATTCAGTAAAGATACATCAAGCCAACGTGGATCTGGAAAATGAGTCACAGAAGT TAACGATGAAAGATTTGCTGGCTTGGGGCCGTACCAATTTGATCAAGGAGAGGCCTGAGATGTTCATGAAAGGAGATACCGTGAGGCCTGGTGTTCTAGT TCTGGTGAACGACTGTGATTGGGAGCTGAGTGGGCAGCTTGACACGACTCTGCAAGAGAAAGACGTGGTGGTTTTCATTTCCACCTTGCATGGTGGCTAG
AA sequence Show only first row Show all	>Lus10036551 pacid=23174440 polypeptide=Lus10036551 locus=Lus10036551.g ID=Lus10036551.BGIv1.0 annot-version=v1.0 MQLTLEFGGGLELLCDSVKIHQANVDLENESQKLTMKDLLAWGRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLQEKDVVVFISTLHGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61113			Ubiquitin related modifier 1 (...		Lus10036551 [exp]	0	1
AT5G58920			unknown protein		Lus10040699 [exp]	1.4	0.8944
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030906 [exp]	2.0	0.9012
AT3G11591			unknown protein		Lus10016986 [exp]	2.8	0.8740
AT2G37195			unknown protein		Lus10023187 [exp]	3.2	0.8708
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10019447 [exp]	3.2	0.8842
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10042022 [exp]	3.5	0.8884
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008023 [exp]	5.7	0.8706
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10029426 [exp]	6.5	0.8940
AT5G22875			unknown protein		Lus10037369 [exp]	7.7	0.8486
AT1G71430			unknown protein		Lus10007091 [exp]	8.2	0.8474

Compare expression of checked genes

Lus10036551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.