Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01910 545 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) AT3G10350 122 / 2e-31 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60730 117 / 1e-29 Anion-transporting ATPase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041377 [exp] 644 / 0 AT1G01910 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10037982 [exp] 120 / 1e-30 AT3G10350 620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10038715 [exp] 120 / 2e-30 AT3G10350 622 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021449 [exp] 97 / 2e-22 AT3G10350 434 / 2e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G152500 [exp] 551 / 0 AT1G01910 590 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.014G078100 [exp] 541 / 0 AT1G01910 580 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.010G225100 [exp] 128 / 2e-33 AT3G10350 599 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G037100 [exp] 127 / 5e-33 AT3G10350 592 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02374 [flax] [poplar] ArsA_ATPase Anion-transporting ATPase
Representative CDS sequence Show only first row Show all	>Lus10036552 pacid=23174507 polypeptide=Lus10036552 locus=Lus10036552.g ID=Lus10036552.BGIv1.0 annot-version=v1.0 ATGGCTGAGAACGAAGATTTGCCGGAAGGGACGCTGCAGAACATACTGGACCACGAGACTCTTAAATGGGTTTTCGTCGGAGGCAAAGGCGGTGTCGGAA AAACCACTTGCAGCTCCATTCTGTCCATTCTCTTGGCCAGCGTCAGATCCTCCGTTTTGATCATATCAACTGATCCGGCTCACAATCTCAGCGACGCTTT CCAACAGCGCTTCACCAAGTCCCCCTCATTGGTCAATGGCTTCACCAATCTTTACGCCATGGAGGTGGATCCCACTGTTGAGAATGAAGAGGTGGGTGGA AACGAAGAGATGGATAGTTTATTCTCTGAGCTAGCTAATGCAATTCCTGGTATTGATGAGGCCATGAGCTTTGCTGAAATGTTGAAGTTGGTGCAGACAA TGGATTATAGTGTTATTGTCTTCGATACAGCACCAACCGGACATACACTTCGGCTATTACAATTTCCGTCAACTTTGGAGAAGGGTCTTCAAAAGATGAT GTCCTTAAAACATAGATTTGGTGGATTGTTGACCCAGGTGACTCGTATGTTTGGTATCGATGGTGATTTCGGGGAAGATGCAATTTTGGGGAGACTTGAG GGCATGAAAGATGTAATTGAACAAGTGAACAGGCAGTTCAAAGACCCGGACATGACAACTTTCGTATGTGTGTGCATTCCGGAGTTCCTCTCTCTCTATG AAACAGAGAGATTGGTTCAAGAACTCACGAAGTTTGAAATCGACACACACAACATTATCATCAACCAAGTGCTTTACAACGAAGACGATGTTGAATCGAA ACTGCTCAAGGCTAGAATGCGGATGCAGCAGAAGTACTTGGACCAGTTCTATATGCTATACGATGATTTCCACATCACCAAACTGCCCTTGCTACCTGAA GAGGTAACTGGAGTTGAAGCTCTGAAGAACTTTTCGAGGCGGTTCCTGACCCCACATCAGCCGGCAGCAGCGAACTTAACAGCGGAAGAGATGGAAGAAA GGGTAACCACGCTAAGGAAGAAGTTGGAGGATGCTGAGGCAGAGCTAGAGAAACTGAGGAAAGGGAAGCAAAAGGCCTAA
AA sequence Show only first row Show all	>Lus10036552 pacid=23174507 polypeptide=Lus10036552 locus=Lus10036552.g ID=Lus10036552.BGIv1.0 annot-version=v1.0 MAENEDLPEGTLQNILDHETLKWVFVGGKGGVGKTTCSSILSILLASVRSSVLIISTDPAHNLSDAFQQRFTKSPSLVNGFTNLYAMEVDPTVENEEVGG NEEMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSVIVFDTAPTGHTLRLLQFPSTLEKGLQKMMSLKHRFGGLLTQVTRMFGIDGDFGEDAILGRLE GMKDVIEQVNRQFKDPDMTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYNEDDVESKLLKARMRMQQKYLDQFYMLYDDFHITKLPLLPE EVTGVEALKNFSRRFLTPHQPAAANLTAEEMEERVTTLRKKLEDAEAELEKLRKGKQKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01910			P-loop containing nucleoside t...		Lus10036552 [exp]	0	1
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Lus10033055 [exp]	3.3	0.8534
AT3G12760			unknown protein		Lus10009599 [exp]	3.9	0.8345
AT3G22480		PDF2	prefoldin 2 (.1.2)		Lus10010556 [exp]	6.3	0.8107
AT5G58030			Transport protein particle (TR...		Lus10003350 [exp]	8.1	0.8499
AT5G27430			Signal peptidase subunit (.1)		Lus10040138 [exp]	9.2	0.8226
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10036549 [exp]	13.0	0.8092
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Lus10013349 [exp]	13.9	0.8329
AT2G23940			Protein of unknown function (D...		Lus10041903 [exp]	14.7	0.8256
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	20.5	0.7860
AT5G27470			seryl-tRNA synthetase / serine...		Lus10010211 [exp]	20.8	0.7779

Compare expression of checked genes

Lus10036552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.