Plant FIBer expression Database

Lus10036553 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G01840 86 / 1e-21 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041376
[exp]
256 / 1e-88 AT1G01840 99 / 9e-27 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G153000
[exp]
137 / 1e-41 AT1G01840 94 / 1e-24 unknown protein
Potri.014G077000
[exp]
128 / 4e-38 AT1G01840 100 / 2e-27 unknown protein
PFAM info
Representative CDS sequence
>Lus10036553 pacid=23174659 polypeptide=Lus10036553 locus=Lus10036553.g ID=Lus10036553.BGIv1.0 annot-version=v1.0
ATGGAGGAAATGACAGCACCAGATGCAGCAAACCCGCCGCCGGTACCGTTGCCGGATCTCGTACTATCCTTAGAGCAGGCAACTCAACTTGCGAACCAGC
TCCCTTCAACATCCGACCCATATCACATCCAACAAATCTACTCCGCACTCCACCTCGCCCACCACCATCTCGCTTCCTTCCTCCAATCACCGCCGCCGGA
GAACTCCGTCTCCTCCGCCACCGGAGCCGGAGAACAAGAAGACAACAACAGCGGTGAGCCGATGCAAGTTGGGGAAGACGAAGAAGAGGAGAATTCAATG
GCTGCGACAATCAATAAAGTAGAGGAGAGGATGAAGAATTGTTTCATAAAGAACAAACGGCAACGAAAGCGGCCACTTTCGCCTTCTTCCGCCGCCGATG
ATGGATACGTCGACGGAACAACAATCAAAGGGGCTTTTGACCCTCTTGGGACCAGATTGAGAGCTCTGGACCTTATCGACCAGTTCCATGCCTGA
AA sequence
>Lus10036553 pacid=23174659 polypeptide=Lus10036553 locus=Lus10036553.g ID=Lus10036553.BGIv1.0 annot-version=v1.0
MEEMTAPDAANPPPVPLPDLVLSLEQATQLANQLPSTSDPYHIQQIYSALHLAHHHLASFLQSPPPENSVSSATGAGEQEDNNSGEPMQVGEDEEEENSM
AATINKVEERMKNCFIKNKRQRKRPLSPSSAADDGYVDGTTIKGAFDPLGTRLRALDLIDQFHA

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G01840 unknown protein Lus10036553
[exp]
0 1
AT4G02340 alpha/beta-Hydrolases superfam... Lus10010293
[exp]
3.3 0.8781
AT1G29970 RPL18AA 60S ribosomal protein L18A-1 (... Lus10028130
[exp]
6.6 0.7792
AT5G41350 RING/U-box superfamily protein... Lus10024635
[exp]
18.7 0.8186
AT4G27880 Protein with RING/U-box and TR... Lus10022405
[exp]
19.3 0.8411
AT4G16210 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-C... Lus10016920
[exp]
20.3 0.8450
AT4G35220 Cyclase family protein (.1) Lus10019822
[exp]
21.2 0.8106
AT2G02870 Galactose oxidase/kelch repeat... Lus10036735
[exp]
24.0 0.8282
AT4G16210 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-C... Lus10037777
[exp]
24.7 0.8145
AT2G19460 Protein of unknown function (D... Lus10011939
[exp]
26.3 0.8143
AT3G02130 TOAD2, RPK2, CL... TOADSTOOL 2, clv3 peptide inse... Lus10004646
[exp]
27.5 0.7931

Lus10036553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.