Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01880 581 / 0 5'-3' exonuclease family protein (.1.2) AT3G28030 108 / 2e-24 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) AT3G48900 107 / 4e-24 single-stranded DNA endonuclease family protein (.1.2) AT5G26680 73 / 1e-13 5'-3' exonuclease family protein (.1.2) AT1G29630 47 / 5e-05 5'-3' exonuclease family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041375 [exp] 1029 / 0 AT1G01880 660 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10005744 [exp] 113 / 3e-26 AT3G48900 563 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10039424 [exp] 112 / 1e-25 AT3G28030 548 / 8e-170 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10027451 [exp] 108 / 9e-25 AT3G48900 560 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10000270 [exp] 75 / 3e-14 AT5G26680 512 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10039423 [exp] 48 / 1e-05 AT3G28030 269 / 3e-82 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G077300 [exp] 704 / 0 AT1G01880 667 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.002G152801 [exp] 241 / 5e-74 AT1G01880 190 / 7e-55 5'-3' exonuclease family protein (.1.2) Potri.017G070500 [exp] 111 / 4e-25 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Potri.015G142800 [exp] 102 / 8e-23 AT3G48900 609 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Potri.013G000700 [exp] 78 / 3e-15 AT5G26680 650 / 0.0 5'-3' exonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0464 [flax] [poplar] 5_3_exonuc_C PF00867 [flax] [poplar] XPG_I XPG I-region
Representative CDS sequence Show only first row Show all	>Lus10036554 pacid=23174562 polypeptide=Lus10036554 locus=Lus10036554.g ID=Lus10036554.BGIv1.0 annot-version=v1.0 ATGGGCGTCGGCGGCAAGTTCTGGGACTTGCTAAAACCCTTCGCTCGCCACGAGGATCCTGATTTCCTCAGAGACAAAAAGGTCGCCGTCGATCTTTCTT ACTGGATCGTCCAGCACGAGACCGCCATCAAAACCTACTCCTTCGGCGCATTCCCGGTGTTCGTCGCCGACGGAACTCCTTCGCCGTTGAAGTCTCAGGC GAGGATAGCCAGATTCTTCAGGATTTCCGGCATTGACGCTTCACAATGGCCGGTGGCTGAAGAAGGTGTGTCCGTTGAGAGAAACGGAGCTTTTTTGAAG TGTGTTAAGGAGTGCATTGAGCTGCTGGAACTCTTCGGGATGCCTGTTTTGAAAGCGAACGGGGAAGCTGAAGCATTGTGTGCGCAGCTGAATCTGGAAG GTCGTGTAGATGCATCTATCACGGCTGACAGTGATGCTTTCCTCTTTGGTGCTCAGTGCGTGATCAAATCCATTAAACCCAATGCAAAGGATCCCTTTGA ATGCTATCTCATGTCAGATATTGAAGCTGGTCTAGGGTTAAAGAGGGAACATTTAATTGCCATTTCTCTCTTGGTTGGCAATGATCATGATCTTACTGGT GTTCAAGGGATCGGAATCGATAATGCTCTTCGATTTGTCCAGCAATTTGGTGCAGATGAGATTTTAGACAAATTACGTGAAATTGGTAGTGGGAGTGATC CTTCTTCCCAGGGTAGTCCAAAAGTTTTGAACAGTCCAATGCTCAGTACTCCAGGTGACAATTCTTCAACTAAGTCAAGAGTTACTCACTGCTCAGTCTG TGGTCATCCTGGCAGCAAAAGAGCACATGGAAAGTCATCTTGTGAATATTGTCAACCCAGCTGTGAGGAAGGTTGCGTGAAAAAGCCTGAGGGATTTAGG TGTAACTGCTCATGCTGTGATATGGACAGGAAAGAGAAAGAGCAGATAAAGCATGAAAACTGGATAATGAAAGTTTGTGATAAGATTGCCAGGGAGCCAA ATTTCCCTAATGACAAGATAATTGAGATGTACTTGTGCAAAGAGAATGGGAACTTCACTGGCGATGATCCTTGTATTTCATGGCAAACCCCAGAAACCGA CATGTTGGTCGACTTGATGGTTTTCCGGCAGCATTGGGAGCCGTCTTATGTCAGACGGAGGATACTTCCTATGCTGTCCACCATATATCTCAGAGACACC GCGGAAAGGCCAGCAAAGTCCTTGTTAAATGGGCAATTCGAATTCGATTGCATTCAGCGGATAAAGATCAGGGCTGGACACCAATCTTTTGTAGTGAAAT GGAGGAAAGCCGGTACAAAGCTAACTGATTCTTCACATCATCATCATGAAGAGCAAGATGAGATTATCGAGATTGATGAAACTTCCGATGGTTTGAACGA GGAGTTGGAAGAACCACCCCTGATTCATGTCGATCATGAGGGTCAGTTTATCTCGACGGACGAAAATATGGAGCTTGTCCGTGCTGCTTTCCCAGACGAA GTTGCGAATTTTTTGTTGGCCAAGGAACTGAAAGAATCGAAGAGAAAGCGTTCAAAATCTGGTGATAAGTCAAAAAACCTAAAGTCAAAAGGTGTCCAGC TTACAATTACTGAGTTTTATCGGTCAAGCAAATCTCAAGTCGGTGATAAACAAGGAGAAGTCTCCAAGCGTTCTCCAAACGAAGAAGACAAAGAAGAAAT CAAGAAGACTTCAAATTCACCTCTGTCAAAGTCTGCTAGACGCCGACTTCTGTTCAAGTAG
AA sequence Show only first row Show all	>Lus10036554 pacid=23174562 polypeptide=Lus10036554 locus=Lus10036554.g ID=Lus10036554.BGIv1.0 annot-version=v1.0 MGVGGKFWDLLKPFARHEDPDFLRDKKVAVDLSYWIVQHETAIKTYSFGAFPVFVADGTPSPLKSQARIARFFRISGIDASQWPVAEEGVSVERNGAFLK CVKECIELLELFGMPVLKANGEAEALCAQLNLEGRVDASITADSDAFLFGAQCVIKSIKPNAKDPFECYLMSDIEAGLGLKREHLIAISLLVGNDHDLTG VQGIGIDNALRFVQQFGADEILDKLREIGSGSDPSSQGSPKVLNSPMLSTPGDNSSTKSRVTHCSVCGHPGSKRAHGKSSCEYCQPSCEEGCVKKPEGFR CNCSCCDMDRKEKEQIKHENWIMKVCDKIAREPNFPNDKIIEMYLCKENGNFTGDDPCISWQTPETDMLVDLMVFRQHWEPSYVRRRILPMLSTIYLRDT AERPAKSLLNGQFEFDCIQRIKIRAGHQSFVVKWRKAGTKLTDSSHHHHEEQDEIIEIDETSDGLNEELEEPPLIHVDHEGQFISTDENMELVRAAFPDE VANFLLAKELKESKRKRSKSGDKSKNLKSKGVQLTITEFYRSSKSQVGDKQGEVSKRSPNEEDKEEIKKTSNSPLSKSARRRLLFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01880			5'-3' exonuclease family prote...		Lus10036554 [exp]	0	1
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10037812 [exp]	4.2	0.8855
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	6.9	0.8814
					Lus10014678 [exp]	14.8	0.8728
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	18.2	0.8690
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	19.3	0.8551
AT4G29490			Metallopeptidase M24 family pr...		Lus10032694 [exp]	23.4	0.8316
AT2G07715			Nucleic acid-binding, OB-fold-...		Lus10037433 [exp]	27.7	0.7736
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10026026 [exp]	31.8	0.8179
AT1G73350			unknown protein		Lus10042294 [exp]	33.2	0.8437
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10020784 [exp]	33.8	0.8323

Compare expression of checked genes

Lus10036554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.