Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61080 401 / 8e-142 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041374 [exp] 478 / 4e-172 AT3G61080 523 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G153100 [exp] 422 / 4e-150 AT3G61080 499 / 1e-179 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03881 [flax] [poplar] Fructosamin_kin Fructosamine kinase
Representative CDS sequence Show only first row Show all	>Lus10036555 pacid=23174455 polypeptide=Lus10036555 locus=Lus10036555.g ID=Lus10036555.BGIv1.0 annot-version=v1.0 ATGACAGAAGGGAAGGCGACCAAGATTACAAGGATCAGCCCAATCGGAGGCGGCTGCATAAATCGTGCTAATCGCTATGAAACTGACGCTGGTCCTTTCT TTGTCAAGACGAATAGGAGTATTGGACCATCCATGTTTGAAGGAGAATCTCTGGGGCTAAATGCTATGTATGAGACTGGAACTATCCGTGTTCCTAGGCC ATTCAAGGTTGGAGCTCTGCCAACCGGTGGATCGTACATAATCATGGAATTCATTCAATTCGGTGCATCTAGGTCGAACCAGTCTGAGTTAGGAAGGAAG CTTGCTGAAATGCATAAAGCTGGAAAATCGGGAAAAGGCTTCGGGTTTGATGTGGACAATACAATTGGCAGTACTCCACAGATAAACAAATGGACATCAG ATTGGATTGAATTCTACGTGGAGCACAGATTGGGATACCAACTGAAGTTAGCATTAGATCAGTATGGCGATTCGACCATATACCAGAAAGAGCCATGCCT GCTTCATGGAGATTTGTGGAGTGGGAACATCAGCTCAGACAACAACGGAGATCCTGTGATTCTCGATCCGGCTTGCTATTATGGACACAGTGAAGCGGAG TTTGGGATGTCGTGGTGTGCAGGTTTCGGAGGAGCGTTCTACAATGGCTACTTTGAGGTGATGCCAAAGCAAGCAGGGTTTGAGAAGAGGAAGGATCTGT ACATGCTGTATCATTACCTGAATCATTACAATCTCTTTGGTTCCGGCTATCGATCTTCCTCGATGTCCATCATAGATGACTACCTTCGGTTGCTGAATGT ATAG
AA sequence Show only first row Show all	>Lus10036555 pacid=23174455 polypeptide=Lus10036555 locus=Lus10036555.g ID=Lus10036555.BGIv1.0 annot-version=v1.0 MTEGKATKITRISPIGGGCINRANRYETDAGPFFVKTNRSIGPSMFEGESLGLNAMYETGTIRVPRPFKVGALPTGGSYIIMEFIQFGASRSNQSELGRK LAEMHKAGKSGKGFGFDVDNTIGSTPQINKWTSDWIEFYVEHRLGYQLKLALDQYGDSTIYQKEPCLLHGDLWSGNISSDNNGDPVILDPACYYGHSEAE FGMSWCAGFGGAFYNGYFEVMPKQAGFEKRKDLYMLYHYLNHYNLFGSGYRSSSMSIIDDYLRLLNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61080			Protein kinase superfamily pro...		Lus10036555 [exp]	0	1
AT1G35180			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10010635 [exp]	4.7	0.8714
AT3G17930			unknown protein		Lus10026379 [exp]	6.2	0.9141
AT5G47435			formyltetrahydrofolate deformy...		Lus10028958 [exp]	9.8	0.8603
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027576 [exp]	10.1	0.8791
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10008555 [exp]	11.2	0.8611
AT4G20760			NAD(P)-binding Rossmann-fold s...		Lus10036204 [exp]	16.7	0.8261
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10040228 [exp]	16.7	0.8907
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Lus10014115 [exp]	17.9	0.8775
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10033538 [exp]	18.0	0.8739
AT1G74410			RING/U-box superfamily protein...		Lus10001654 [exp]	20.7	0.8794

Compare expression of checked genes

Lus10036555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.