Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45720 626 / 0 ARM repeat superfamily protein (.1.2) AT1G01830 551 / 0 ARM repeat superfamily protein (.1.2.3) AT5G50900 251 / 8e-76 ARM repeat superfamily protein (.1) AT1G61350 149 / 3e-38 ARM repeat superfamily protein (.1) AT2G05810 147 / 9e-38 ARM repeat superfamily protein (.1.2) AT2G23140 73 / 3e-13 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G54790 72 / 5e-13 ARM repeat superfamily protein (.1.2) AT3G01400 65 / 5e-11 ARM repeat superfamily protein (.1) AT5G58680 64 / 8e-11 ARM repeat superfamily protein (.1) AT1G23030 59 / 9e-09 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041369 [exp] 1001 / 0 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10016848 [exp] 440 / 5e-152 AT2G45720 326 / 8e-108 ARM repeat superfamily protein (.1.2) Lus10018423 [exp] 125 / 3e-30 AT1G61350 499 / 2e-171 ARM repeat superfamily protein (.1) Lus10002598 [exp] 120 / 2e-28 AT1G61350 495 / 5e-170 ARM repeat superfamily protein (.1) Lus10029995 [exp] 118 / 5e-28 AT2G05810 438 / 5e-149 ARM repeat superfamily protein (.1.2) Lus10035337 [exp] 101 / 4e-23 AT2G05810 382 / 3e-129 ARM repeat superfamily protein (.1.2) Lus10035338 [exp] 81 / 3e-17 AT2G05810 239 / 4e-76 ARM repeat superfamily protein (.1.2) Lus10029996 [exp] 81 / 4e-17 AT2G05810 239 / 4e-76 ARM repeat superfamily protein (.1.2) Lus10024899 [exp] 80 / 2e-15 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G076500 [exp] 721 / 0 AT2G45720 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G153700 [exp] 699 / 0 AT2G45720 717 / 0.0 ARM repeat superfamily protein (.1.2) Potri.012G104400 [exp] 261 / 6e-80 AT5G50900 624 / 0.0 ARM repeat superfamily protein (.1) Potri.015G103700 [exp] 253 / 7e-77 AT5G50900 546 / 0.0 ARM repeat superfamily protein (.1) Potri.004G033800 [exp] 186 / 2e-51 AT1G61350 629 / 0.0 ARM repeat superfamily protein (.1) Potri.011G042300 [exp] 183 / 1e-50 AT1G61350 622 / 0.0 ARM repeat superfamily protein (.1) Potri.014G158700 [exp] 167 / 4e-45 AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2) Potri.002G224400 [exp] 163 / 2e-43 AT2G05810 459 / 3e-156 ARM repeat superfamily protein (.1.2) Potri.005G225400 [exp] 84 / 1e-16 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 81 / 1e-15 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10036559 pacid=23174490 polypeptide=Lus10036559 locus=Lus10036559.g ID=Lus10036559.BGIv1.0 annot-version=v1.0 ATGGTAATGGGAGAAATTCCCAGCGCCTGGAAAGGCAAAGAAGTTGTTGTTGCATCAACGGAATTCCAGTCGGCGGAAGATTGGCTTTCTTATGCTCAAG AGACAATTCCTCTGGCGACAGAAAAGGCGAAACAAGTCAAGGGCTTATTCCCAGGAAGGTGGAAGAACATCATCTCCAAGCTAGAGCAGATTTCCCCGCT GATTTCAGAGCTATCGAGGCACCCTTGCTTCTCCAAGAACCCTCTCTGTAAAGAGCAGTTGCAATCAGTCTCGTCAATTCTTGACGAGACTGTAAAATTG GCTGAGCTCTGTTTGGGGCAGAAGCAACAAGGGAAGCTGCAGATGCAGAGTGACCTCGATTCTCTGTCCGGGAAGTTGGATTTGAACTTGAAGGACTGTT CGGTTCTAATCAAGACGGCTCTTCTAGCTGAAGCTCCATCTTCCATGTCAAAATCGAAATCAGAGGATGCTGTTTCCTCTGTTCTGAGTGAGTTACTTGC TCGGCTTCAAATTGGCGATCTGGACTCCAAGCACCGAGCTCTAGACGGAGTAGTCGAGTTCATGAAAGAAGATGAATCAAAGGCACTACAATCTCTCATC ACCAGGAGCAACGTAGCAGCTTTGGTTCAGCTGTTAACCGCAACTTCGCCGCGAATTCGAGAAAAGACCGTTACTATAATCTGCTCGCTGGTCGAATCGG GAAGTTGCTGCGAAAATTGGCTGGTTTCAGAGAATGTCCTGCCTTCTCTGATCAGGCTGATAGAGTCTGGAACAGAAATGGGGAAGGAAAAGGCCGTCTA TTCACTCCAGAGGCTTTCGATCGATGCCGAAACGGCCAGATCGATTGTTGGCCATGGCGGAATTCAGCCACTGATCGAGCTGTGTAAAACAGGGGACTCT GTTTCTCAGGCTGCAGCAGCTTGCACACTGAAGAACATTTCGACCGTGCCCGAAGTTCGGCAGAGTCTAGCTGAAGAAGGAGCTGTTAAGGTAACGATCG ACCTTCTAGATTGCGGGATCCTGCTCGGAACGAAAGAATACGCAGCGGAATGCCTACAGAATCTCACCGCAAGCAACGAGAGCTTGCGAAGAATTGTGAT ATCGGAAGGCGGGATTCGGTCCTTGTTAGCATATCTCGACGATACTTCTCTGCCTCAGGAATCTCCAATTGCAGCATTGAGGAATTTGGTCAACTCTGTT TCAATGGAAACCCTAGTTTCGTCCGGGTTCTTCCCCCGAATCGTCCACGTGCTAAAGTCGGGATCATTAGGAGCGCAGCAGGCCGCCGCGTCAGCAATCT GTCGAGTATGCGCGTCGAATTTGGAGATGAAGAAGCTAGCAGGGGAAGCGGGGTGCATTCCTTTACTCATCAAACTACTCGAGGCAAAATCGAACGGAGC GAGGGAGGCGTCCGCTCAGGCGATTTCGAGCTTGATGACGGTATCACAGAACACGAAGGAGGTTAAGAAGGATTACGGGAGGAGCGTGCCGAGTTTGGTG CAGTTGTTGGAGGCTAGCCCGCAGAACACGGCGAAGAAGTACGCGGTGGCGTGCCTTTCGGGACTTTCGTCGAGCAGGAAGTGCAGGAAGATGATGGTGT CGTACGGGGCGAGCGGGTACTTGAAGAAGCTGACGGAGATGGATGTTGCTGGGTCGAAGAAGCTGCTGGAGAGGCTGGAACGAGGGAAGATCAGGAGCTT GTTTATTAGGAAATAA
AA sequence Show only first row Show all	>Lus10036559 pacid=23174490 polypeptide=Lus10036559 locus=Lus10036559.g ID=Lus10036559.BGIv1.0 annot-version=v1.0 MVMGEIPSAWKGKEVVVASTEFQSAEDWLSYAQETIPLATEKAKQVKGLFPGRWKNIISKLEQISPLISELSRHPCFSKNPLCKEQLQSVSSILDETVKL AELCLGQKQQGKLQMQSDLDSLSGKLDLNLKDCSVLIKTALLAEAPSSMSKSKSEDAVSSVLSELLARLQIGDLDSKHRALDGVVEFMKEDESKALQSLI TRSNVAALVQLLTATSPRIREKTVTIICSLVESGSCCENWLVSENVLPSLIRLIESGTEMGKEKAVYSLQRLSIDAETARSIVGHGGIQPLIELCKTGDS VSQAAAACTLKNISTVPEVRQSLAEEGAVKVTIDLLDCGILLGTKEYAAECLQNLTASNESLRRIVISEGGIRSLLAYLDDTSLPQESPIAALRNLVNSV SMETLVSSGFFPRIVHVLKSGSLGAQQAAASAICRVCASNLEMKKLAGEAGCIPLLIKLLEAKSNGAREASAQAISSLMTVSQNTKEVKKDYGRSVPSLV QLLEASPQNTAKKYAVACLSGLSSSRKCRKMMVSYGASGYLKKLTEMDVAGSKKLLERLERGKIRSLFIRK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45720			ARM repeat superfamily protein...		Lus10036559 [exp]	0	1
AT4G10330			glycine-rich protein (.1)		Lus10001606 [exp]	2.4	0.9617
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10037577 [exp]	5.9	0.9493
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10005886 [exp]	6.2	0.9572
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Lus10030092 [exp]	6.9	0.9518
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Lus10043007 [exp]	7.3	0.9557
AT3G06390			Uncharacterised protein family...		Lus10012808 [exp]	9.2	0.9329
AT2G27180			unknown protein		Lus10013375 [exp]	9.9	0.9401
AT2G05910			Protein of unknown function (D...		Lus10033433 [exp]	11.9	0.9008
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10002256 [exp]	12.2	0.9339
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Lus10036274 [exp]	15.2	0.9430

Compare expression of checked genes

Lus10036559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.