Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01820 416 / 2e-149 PEX11C peroxin 11c (.1) AT2G45740 404 / 5e-145 PEX11D peroxin 11D (.1.2.3) AT3G61070 390 / 3e-139 PEX11E peroxin 11E (.1.2.3) AT1G47750 51 / 2e-07 PEX11A peroxin 11A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041368 [exp] 480 / 2e-174 AT1G01820 416 / 1e-149 peroxin 11c (.1) Lus10003945 [exp] 51 / 2e-07 AT1G47750 322 / 8e-112 peroxin 11A (.1) Lus10029260 [exp] 47 / 6e-06 AT1G47750 318 / 4e-110 peroxin 11A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G076400 [exp] 417 / 9e-150 AT2G45740 392 / 4e-140 peroxin 11D (.1.2.3) Potri.002G153800 [exp] 415 / 4e-149 AT2G45740 400 / 1e-143 peroxin 11D (.1.2.3) Potri.009G133900 [exp] 209 / 3e-69 AT2G45740 206 / 3e-68 peroxin 11D (.1.2.3) Potri.002G134000 [exp] 49 / 6e-07 AT1G47750 332 / 8e-116 peroxin 11A (.1) Potri.014G042000 [exp] 48 / 2e-06 AT1G47750 327 / 8e-114 peroxin 11A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05648 [flax] [poplar] PEX11 Peroxisomal biogenesis factor 11 (PEX11)
Representative CDS sequence Show only first row Show all	>Lus10036560 pacid=23174597 polypeptide=Lus10036560 locus=Lus10036560.g ID=Lus10036560.BGIv1.0 annot-version=v1.0 ATGACTACTTTGGATGCAACAAGAGCCGAGCTTGCCCTGGTGGTTCTGTATCTGAACAAGGCTGAGGCTAGGGACAAGATATGCAGAGCAATTCAATACG GTTCCAAGTTTGTGAGCAACGGGCAGCCTGGAACTGCTCAGAATGTTGACAAATCCACTAGCGTGGCAAGGAAAGTTTTCCGTCTCTTCAAGTTTGTCAA TGATTTGCATGGTTTGATCAGCCCAGTTCCCCAAGGAACTCCGCTTCCTCTTGTTTTGTTGGGAAAGTCCAAGAATGCTTTGTTGTCGACTTTCCTGTTC CTTGATCAAATCGTCTGGCTCAGTAGGAGTGGCATTTACAAGAACAAGGAACGAGCTGAGCTACTTGGCCGCATATCTCTCTTTTGTTGGATGGGATCGT CAATCTGTACCACACTGGTTGAGGTTGGGGAGCTCGGTAGGCTGTCTGCATCGATCAAGAAGTTGGAGAAAGAGCTTAAGAACACTGACAAGCATCAAAA CGAGCACTACCGTGCTAAGGTCCAGAAGTCGAACGAGAGGTCCCAAGCTCTCGTCAAGGCAGGCATCGATATCGTGGTTGCTGTTGGGCTTCTGCAGTTG GCACCGAAGAAAGTTACTCCTCGCGTAACCGGTGCCTTTGGATTTACTAGCTCTCTGATCTCCTGCTATCAGGCAATTGCTTCCATCGCGGCCAAAGGCG AAGTCAGCCTGAAGAAGGGTGGGATCCCTTGA
AA sequence Show only first row Show all	>Lus10036560 pacid=23174597 polypeptide=Lus10036560 locus=Lus10036560.g ID=Lus10036560.BGIv1.0 annot-version=v1.0 MTTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFVSNGQPGTAQNVDKSTSVARKVFRLFKFVNDLHGLISPVPQGTPLPLVLLGKSKNALLSTFLF LDQIVWLSRSGIYKNKERAELLGRISLFCWMGSSICTTLVEVGELGRLSASIKKLEKELKNTDKHQNEHYRAKVQKSNERSQALVKAGIDIVVAVGLLQL APKKVTPRVTGAFGFTSSLISCYQAIASIAAKGEVSLKKGGIP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01820		PEX11C	peroxin 11c (.1)		Lus10036560 [exp]	0	1
AT4G13530			unknown protein		Lus10002932 [exp]	7.1	0.9021
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027787 [exp]	13.0	0.9071
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10022727 [exp]	14.3	0.9221
AT3G10620		ATNUDX26	nudix hydrolase homolog 26 (.1...		Lus10018988 [exp]	15.6	0.8485
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	20.0	0.9199
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10038637 [exp]	23.5	0.8779
AT5G58800			Quinone reductase family prote...		Lus10005862 [exp]	24.0	0.9100
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	26.1	0.9190
AT1G52920		GPCR, GCR2	G-PROTEIN COUPLED RECEPTOR 2, ...		Lus10020719 [exp]	27.5	0.8884
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10021515 [exp]	28.4	0.9014

Compare expression of checked genes

Lus10036560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.