Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00755 320 / 1e-107 F-box family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041367 [exp] 645 / 0 AT4G00755 306 / 4e-102 F-box family protein (.1.2) Lus10015001 [exp] 311 / 6e-104 AT4G00755 273 / 8e-89 F-box family protein (.1.2) Lus10038879 [exp] 187 / 6e-57 AT4G00755 142 / 9e-40 F-box family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G076300 [exp] 397 / 7e-138 AT4G00755 352 / 7e-120 F-box family protein (.1.2) Potri.002G153900 [exp] 390 / 2e-135 AT4G00755 311 / 3e-104 F-box family protein (.1.2) Potri.014G076200 [exp] 94 / 4e-23 AT4G00755 95 / 6e-24 F-box family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036561 pacid=23174515 polypeptide=Lus10036561 locus=Lus10036561.g ID=Lus10036561.BGIv1.0 annot-version=v1.0 ATGGAGAACCGTTCGGATTTCTTCAATTGGCTCGACTGCGATGTGTTGATGTACATTTTCATGTTCTTGGATGACCCTGCTGATCTCGTCCGCGCCAGCT CCGTCTCCAGAACTTGGCGAGATTTTGTTGTGAAGAATGGTCTCTGTAAGCTCCTTTGCATGAGAAAGTTCGCTGCTATGCATAAACTTAAGAGTGTCAT CGAACCAAGCCGTTGTGTCAAGGATATTGCAGAAGTTGGATCCAGCGGATCTGTGGAAGATGACAAAAACTTAGGGGTTGAGCACAGAACTCTTGCATTT CTTGCTCATTCTTCCAATTCGTTTCCTTTGAGAGAATGCATAGGTGAGGCAATAAGTGCCTCTAGCACCGATAACTACCCGGATGAGAGTGTTCGCAATA CGCTGGAACCGCTCGATATGGTTACAACAAGGAGGCCGTCTTATTGGTCAAGTAAAGGACAAAGTGACGATGCTGTACCCGAGAATCTTGTTTACAAGCT TGCTACCGGCATATGTCTTGTTACTGAAATCAACATAAAACCATTTCAAGCTTATTTTCAGTGGGGTTCTCCTATATACTCTGCGAAATCTGTTCGGTTC CGATTGGCCCATTCCATTTCTCCAATGGATGATCCCGTGGGCGAGCTCTGTGACAGCTGTTCTGAGGAGAAAATGGTGTGGACTTACACTTCACCGGAGT TCTTGATGGCACAGGAGAATCGACTACAAAAGTTTAAGCTTCCCGAACCAGTTATGTGCGTTAATGGAATGCTGATGGTTGAGCTGTTGGGCAGAACTCA GAAACAAGCAATAGATGGACTGTTCTACATATGTATATGTAACGTGCAAGTGATGGGGCGGCCTTTATCCCCCGCATTTGGTGTCGATATCCTGGAACCC TCGGGCGGCTTCAACTTAAAGGTGCTTAGCTACGAACCCACATTTCCGGAGCAGCCCTCCCCGAACGAGTATCTTCAAGGGCGACTTCAAGGGCGAATAC GAGACTTGGAGCAGATATTGAATCTGTTACGAGATCAGGGAGTGGTCGTGGAGGATTATGATTGGCACGGCGAGGAGGAGGAAGAGGAAGAGGAAGAGTA G
AA sequence Show only first row Show all	>Lus10036561 pacid=23174515 polypeptide=Lus10036561 locus=Lus10036561.g ID=Lus10036561.BGIv1.0 annot-version=v1.0 MENRSDFFNWLDCDVLMYIFMFLDDPADLVRASSVSRTWRDFVVKNGLCKLLCMRKFAAMHKLKSVIEPSRCVKDIAEVGSSGSVEDDKNLGVEHRTLAF LAHSSNSFPLRECIGEAISASSTDNYPDESVRNTLEPLDMVTTRRPSYWSSKGQSDDAVPENLVYKLATGICLVTEINIKPFQAYFQWGSPIYSAKSVRF RLAHSISPMDDPVGELCDSCSEEKMVWTYTSPEFLMAQENRLQKFKLPEPVMCVNGMLMVELLGRTQKQAIDGLFYICICNVQVMGRPLSPAFGVDILEP SGGFNLKVLSYEPTFPEQPSPNEYLQGRLQGRIRDLEQILNLLRDQGVVVEDYDWHGEEEEEEEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00755			F-box family protein (.1.2)		Lus10036561 [exp]	0	1
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	7.5	0.7765
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10033816 [exp]	10.7	0.8007
AT1G22730			MA3 domain-containing protein ...		Lus10011324 [exp]	10.7	0.7939
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001697 [exp]	12.7	0.7698
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10019260 [exp]	14.1	0.7812
AT4G03000			RING/U-box superfamily protein...		Lus10041245 [exp]	14.7	0.7756
AT5G02620		ATANK1, ANK1	ankyrin-like1 (.1)		Lus10025288 [exp]	18.4	0.7553
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10031680 [exp]	24.3	0.7691
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Lus10036368 [exp]	25.3	0.7667
AT2G40810		ATATG18C	homolog of yeast autophagy 18C...		Lus10001580 [exp]	26.8	0.7460

Compare expression of checked genes

Lus10036561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.