Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45750 97 / 6e-24 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 87 / 2e-20 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 84 / 1e-19 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 78 / 2e-17 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 78 / 3e-17 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 76 / 1e-16 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 51 / 4e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00740 50 / 1e-07 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 49 / 2e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G19120 49 / 3e-07 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041366 [exp] 226 / 8e-72 AT4G00750 784 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 87 / 1e-20 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10005764 [exp] 82 / 7e-19 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017357 [exp] 82 / 1e-18 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036747 [exp] 81 / 3e-18 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10011045 [exp] 78 / 2e-17 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 78 / 3e-17 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10037180 [exp] 77 / 4e-17 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10003014 [exp] 77 / 6e-17 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075700 [exp] 124 / 7e-34 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 116 / 5e-31 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 93 / 8e-23 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 91 / 5e-22 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 90 / 2e-21 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 86 / 4e-20 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 80 / 4e-18 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 78 / 2e-17 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G147800 [exp] 78 / 3e-17 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.012G069000 [exp] 71 / 5e-15 AT1G26850 980 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036562 pacid=23174435 polypeptide=Lus10036562 locus=Lus10036562.g ID=Lus10036562.BGIv1.0 annot-version=v1.0 ATGGCGCCGCCGATTTATAGTTACCACCACTTCATCGCCTCCAAATCTAAACGCCCGAACCTCATCAAAGCCTTATCCACCGTAACCCTCTGCTCAATAT TCTACGTAATCGGCTTCTACCAAAACACCCGCGGCTCAGTTCCCAACAAAAACGATGCCGTCGGAGACATCACCTGCGTCTCCGCCTCCGTCGTCCCTTT GTTCAACCGTACCCTCGACTTCTCCGCGCACCACCGCTCCGCAGACCCGCCGCCGTACTCCGCCCTCCCCGCCCTCCCACCTTGCGACCCTTCCTACTCC GAATACACCCCATGCGAGGATGCCCAGCGCTCCCTCCGGTTCAATCGGACCCGATTAATTTACCGGGAGCGTCACTGCCCGGAAGGACCCGAGGAGAGGC TGAGCTGCCGGGTTCCGGCGCCAAACGGATACCGGTTGCCGTTCTGA
AA sequence Show only first row Show all	>Lus10036562 pacid=23174435 polypeptide=Lus10036562 locus=Lus10036562.g ID=Lus10036562.BGIv1.0 annot-version=v1.0 MAPPIYSYHHFIASKSKRPNLIKALSTVTLCSIFYVIGFYQNTRGSVPNKNDAVGDITCVSASVVPLFNRTLDFSAHHRSADPPPYSALPALPPCDPSYS EYTPCEDAQRSLRFNRTRLIYRERHCPEGPEERLSCRVPAPNGYRLPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10036562 [exp]	0	1
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10000988 [exp]	12.2	0.6603
AT1G33270			Acyl transferase/acyl hydrolas...		Lus10020983 [exp]	17.6	0.6375
AT5G20270		HHP1	heptahelical transmembrane pro...		Lus10008057 [exp]	21.4	0.5845
AT3G49060			U-box domain-containing protei...		Lus10027490 [exp]	28.9	0.5758
AT4G03340			Core-2/I-branching beta-1,6-N-...		Lus10033714 [exp]	29.9	0.5881
AT5G20270		HHP1	heptahelical transmembrane pro...		Lus10038120 [exp]	30.3	0.6279
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034701 [exp]	35.8	0.5851
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10005614 [exp]	36.5	0.5888
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10037561 [exp]	42.3	0.5642
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10032256 [exp]	48.4	0.5523

Compare expression of checked genes

Lus10036562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.