Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00750 710 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 687 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 600 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 590 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 561 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 546 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 484 / 7e-168 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 440 / 2e-150 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 412 / 1e-139 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 390 / 5e-131 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041366 [exp] 812 / 0 AT4G00750 784 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10005764 [exp] 648 / 0 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 595 / 0 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017357 [exp] 594 / 0 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 583 / 0 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003014 [exp] 550 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011045 [exp] 549 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10039385 [exp] 548 / 0 AT1G26850 936 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037180 [exp] 544 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G154400 [exp] 740 / 0 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 737 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 685 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 682 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 603 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 599 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 560 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 553 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G147800 [exp] 542 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.010G094100 [exp] 534 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036563 pacid=23174376 polypeptide=Lus10036563 locus=Lus10036563.g ID=Lus10036563.BGIv1.0 annot-version=v1.0 ATGTTCCCTCGCGGCGCTGACGCTTATATCGATGACATCGGAAAATTGATCAACCTGAAAGACGGCTCAATCCGGACAGCCATTGATACCGGCTGCGGGG TAGCGAGTTTTGGCGCGTATCTTCTGTCGAGGAACATCGTAACGGTGTCGTTTGCACCAAGAGACACCCACGAAGCACAAGTTCAGTTTGCTCTTGAGCG TGGAGTTCCAGCCTTGATTGGAATCCTAGCATCAATCAGATTGCCATACCCTTCAAGGGCATTCGACATTGCTCATTGCTCTCGTTGCCTCATCCCTTGG AGTCAATTCGATGGGCAGTACTTGCTCGAAGTCGATAGGGTGTTGAGGCCGGGTGGTTACTGGATCCTGTCAGGGCCACCAATCAACTGGCAAGGTCACT ACAAAGGGTGGAACAGAACAAGGGAAGATCTGAAAGCAGAGCAGAATAGAATTGAAGGAGTTGCCAAGAGCATCTGCTGGAAAAAGCTTGTTCAGAAGAA TGACATTGCTATTTGGCAGAAAGCCACTAATCACATCCATTGCAAAGCCACTCGGAAGGTGTTTCGCCAGCTGGGTTTCTGCAGTTCCCGCAATCCTGAT CAAGCCTGGTACACCAAAATGGAGACTTGCATAACACCACTTCCTGAGGCATCAGACATCAAGGAAACAGCAGGCGGGGAGTTAGCCAAATGGCCAGAAA GGCTGAATGCCATCCCTCCAAGAATCATGCAAGGAGGAATCAATATCACTCCAGATAAGTTTCATCAGGACACCGAGCTATGGCAGAAAAGGGTAGCGTA TTACAAGAAGGTAGACCAGCAACTTGGCCAGACTGGCCGGTATCGGAACTTGCTCGACATGAATGCAGGTCTGGGCGGCTTTGCAGCAGCTATGGTTCAG GACCCGGTTTGGGTCATGAATGTTGTCCCTGTTGAATCCAAAATCAATACCTTGGGAGTGATCTACGAGCGTGGATTGATCGGAACCTACCAAAGCTGGT GTGAAGCCATGTCAACGTATCCTAGGACTTACGACTTCATTCATGCAGATTCGATCTTCAGCCTCTACGAAAACAAATGTGAAATGGAAGACATACTGCT GGAAATGGACAGAGTGCTGAGACCACAAGGGAGTGTGATCATAAGAGAGGATGTGGATGTGTTAGTGAAGGTGAAAGCCATTATAGAAGCAATGCAATGG GAAGGGATAATTGCAGACCATGAATATGGCCCTAAGTACAGAGAAAAAGTTCTCTTTGCATCTAAGAAGTACTGGACATCACCGCCACCTCTAACTTCAT AG
AA sequence Show only first row Show all	>Lus10036563 pacid=23174376 polypeptide=Lus10036563 locus=Lus10036563.g ID=Lus10036563.BGIv1.0 annot-version=v1.0 MFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASFGAYLLSRNIVTVSFAPRDTHEAQVQFALERGVPALIGILASIRLPYPSRAFDIAHCSRCLIPW SQFDGQYLLEVDRVLRPGGYWILSGPPINWQGHYKGWNRTREDLKAEQNRIEGVAKSICWKKLVQKNDIAIWQKATNHIHCKATRKVFRQLGFCSSRNPD QAWYTKMETCITPLPEASDIKETAGGELAKWPERLNAIPPRIMQGGINITPDKFHQDTELWQKRVAYYKKVDQQLGQTGRYRNLLDMNAGLGGFAAAMVQ DPVWVMNVVPVESKINTLGVIYERGLIGTYQSWCEAMSTYPRTYDFIHADSIFSLYENKCEMEDILLEMDRVLRPQGSVIIREDVDVLVKVKAIIEAMQW EGIIADHEYGPKYREKVLFASKKYWTSPPPLTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10036563 [exp]	0	1
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Lus10040107 [exp]	4.2	0.8917
AT3G06240			F-box family protein (.1)		Lus10014793 [exp]	10.4	0.9013
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10031382 [exp]	11.2	0.8909
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	19.8	0.8936
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10042919 [exp]	23.3	0.8869
AT1G55680			Transducin/WD40 repeat-like su...		Lus10035667 [exp]	30.9	0.8910
					Lus10033269 [exp]	33.5	0.8915
AT4G08480		MEKK2, MAPKKK9	MAPK/ERK KINASE KINASE 2, mito...		Lus10029657 [exp]	33.9	0.8867
AT3G21530			DNAse I-like superfamily prote...		Lus10012772 [exp]	43.6	0.8882
AT3G50150			Plant protein of unknown funct...		Lus10004516 [exp]	50.3	0.8790

Compare expression of checked genes

Lus10036563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.