Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00752 239 / 2e-73 UBX domain-containing protein (.1) AT4G11740 186 / 1e-52 SAY1 Ubiquitin-like superfamily protein (.1) AT4G23040 132 / 2e-33 Ubiquitin-like superfamily protein (.1) AT4G10790 52 / 4e-07 UBX domain-containing protein (.1) AT2G43210 52 / 7e-07 Ubiquitin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041365 [exp] 854 / 0 AT4G11740 241 / 4e-74 Ubiquitin-like superfamily protein (.1) Lus10029591 [exp] 195 / 7e-56 AT4G11740 449 / 9e-153 Ubiquitin-like superfamily protein (.1) Lus10006321 [exp] 187 / 1e-52 AT4G11740 433 / 7e-146 Ubiquitin-like superfamily protein (.1) Lus10027684 [exp] 59 / 2e-09 AT4G10790 219 / 3e-67 UBX domain-containing protein (.1) Lus10026718 [exp] 52 / 5e-07 AT2G43210 341 / 8e-112 Ubiquitin-like superfamily protein (.1.2) Lus10026717 [exp] 52 / 5e-07 AT2G43210 338 / 8e-111 Ubiquitin-like superfamily protein (.1.2) Lus10025504 [exp] 51 / 1e-06 AT2G43210 355 / 1e-117 Ubiquitin-like superfamily protein (.1.2) Lus10003214 [exp] 48 / 1e-05 AT4G10790 525 / 0.0 UBX domain-containing protein (.1) Lus10017317 [exp] 45 / 8e-05 AT4G10790 382 / 4e-130 UBX domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075600 [exp] 377 / 7e-127 AT4G00752 273 / 8e-87 UBX domain-containing protein (.1) Potri.003G122300 [exp] 150 / 2e-39 AT4G11740 409 / 1e-136 Ubiquitin-like superfamily protein (.1) Potri.001G109500 [exp] 149 / 4e-39 AT4G11740 429 / 2e-144 Ubiquitin-like superfamily protein (.1) Potri.015G080200 [exp] 70 / 9e-13 AT4G10790 229 / 1e-70 UBX domain-containing protein (.1) Potri.017G036600 [exp] 56 / 3e-08 AT2G43210 369 / 5e-122 Ubiquitin-like superfamily protein (.1.2) Potri.007G123800 [exp] 56 / 3e-08 AT2G43210 330 / 6e-108 Ubiquitin-like superfamily protein (.1.2) Potri.003G145200 [exp] 52 / 5e-07 AT4G10790 552 / 0.0 UBX domain-containing protein (.1) Potri.001G085600 [exp] 52 / 8e-07 AT4G10790 520 / 0.0 UBX domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02809 [flax] [poplar] UIM Ubiquitin interaction motif CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Lus10036564 pacid=23174555 polypeptide=Lus10036564 locus=Lus10036564.g ID=Lus10036564.BGIv1.0 annot-version=v1.0 ATGGCTGGGCCTACACGCGATGCGATCGAGACCTTTGTCCGAGTCACCGGCGCTTCCCATTCACTCGCCGCACGGAGAATTGAGGAACATGGAGGCAATC TTGACGAAGCTCTGAATTCGCATTTCAGTGGAATAGAGAGCAGCACTTCAAACTCAGTACCGAGTACTTTTCCTCAGCACAATCCGCCAGATGCAAGAAA TCAAGTGCGAAATGAGTCACAGGGCATATTACCAGTTCTTTCTGCTGCGAGAAGTTTCAGACCGTCACTGTTGTTTGACCCGAATTATAGGAGGAACCTT TGGAGTCAGCTTGGTGCTTCTGTCTTCAACAGTGGTAGACCACCTCCTTCACAAACCACACCTTACAACAATGCTTTTGACCAGCCGTACCAGTCAGGAG TGAGGCCTGTCACACAGGATGTGTATCAAGCTTCCTTGCCTAATGATGTGCACCCTTACGGAAATATGCCCAGATATAACGTGCCACATCCGGGTGATAA CAATGTAGAAGAAGAAATGGTCAAGCGTGCAATTGAAGCTTCAAAACAGGAGATCCAAACCCGATCCAGAGCAGGTGTTGCACGGAGCCGGCTTCACCTA GAAGACGAGGTGCTAGCTCGTGCTGTATCATTGTCAATGAAGACAGCAGAAGAAGAGAATGTGATTCGTGAGCACATGGAAAAAGACCAGCTACCGGGAG CCCGGGATCCAAGCAAGAGAAGGACTGGTAGCAGCGGCCTTGATAGTTGGCAGGCTGAGAGCTCAAGCTCAGGGGGGAAAGTTGACGATGAGCAATTGTG GAGTGCCATGTCTTCTGAGGAGCTTGATGAAGCTATTCTTCTTGAGATGGCAATTTTCGGTCAACGCCATGGAGAAAGCTCACTTCAACATGCCTCTGCT GTGCCAAATTATGAAGACAATAGTAAAGTTGTCAACACAAATACTGCACCAAATCCCTTGCCCCTCGTGCAAAAGGAACGACAATCCCTTCGCCAGCAAC AGGATAATGAGTATCTTGCATCTCTCTTGGCTGATAAAGAGAAAGAGGCCACAGTATCAAAGAAAGCTGAACTATCTAGCCCCAATGATGAAAGTTCTCA ACATAAAGTGCTTGATGACGTGGAAACCGAGAGGTTGCTTGCTGCAAAAGAAGCATTGCTTCCTGAAGAACCGCCTGTGGAAGAAGAGAATGCAGTCAAT ATCCTTATTCGCATGCCAGATGGTTCTCGACTTGGTCGCCGGTTTCTCAAGTCCGACAAGCTGAAATATGTGTTCGACTTCATCGACATCGGTAGAGCTG TAAAGGCCGGAACATACAGAGTAGTGAAACCATACCCGAGGAGTGCTTTTTCGGTAGAAGACAGCGGATTGAGTTTGAGCGAAGCAGGTCTGAACAGTAA ACAGGAAGCCTTGTTCATGGAGTTCATTTAG
AA sequence Show only first row Show all	>Lus10036564 pacid=23174555 polypeptide=Lus10036564 locus=Lus10036564.g ID=Lus10036564.BGIv1.0 annot-version=v1.0 MAGPTRDAIETFVRVTGASHSLAARRIEEHGGNLDEALNSHFSGIESSTSNSVPSTFPQHNPPDARNQVRNESQGILPVLSAARSFRPSLLFDPNYRRNL WSQLGASVFNSGRPPPSQTTPYNNAFDQPYQSGVRPVTQDVYQASLPNDVHPYGNMPRYNVPHPGDNNVEEEMVKRAIEASKQEIQTRSRAGVARSRLHL EDEVLARAVSLSMKTAEEENVIREHMEKDQLPGARDPSKRRTGSSGLDSWQAESSSSGGKVDDEQLWSAMSSEELDEAILLEMAIFGQRHGESSLQHASA VPNYEDNSKVVNTNTAPNPLPLVQKERQSLRQQQDNEYLASLLADKEKEATVSKKAELSSPNDESSQHKVLDDVETERLLAAKEALLPEEPPVEEENAVN ILIRMPDGSRLGRRFLKSDKLKYVFDFIDIGRAVKAGTYRVVKPYPRSAFSVEDSGLSLSEAGLNSKQEALFMEFI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00752			UBX domain-containing protein ...		Lus10036564 [exp]	0	1
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	2.2	0.9219
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10026010 [exp]	2.4	0.9054
AT5G50150			Protein of Unknown Function (D...		Lus10039949 [exp]	2.8	0.9173
AT4G32780			phosphoinositide binding (.1)		Lus10009508 [exp]	3.5	0.8950
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10012020 [exp]	6.3	0.9037
AT3G52490			Double Clp-N motif-containing ...		Lus10008970 [exp]	6.7	0.9020
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10032545 [exp]	7.9	0.8876
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035319 [exp]	9.5	0.8895
AT2G23950			Leucine-rich repeat protein ki...		Lus10019963 [exp]	9.8	0.8797
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10006647 [exp]	10.0	0.8875

Compare expression of checked genes

Lus10036564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.