Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61140 710 / 0 EMB78, CSN1, COP11, ATFUS6, FUS6, ATSK31 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) AT3G12850 84 / 1e-17 COP9 signalosome complex-related / CSN complex-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041364 [exp] 896 / 0 AT3G61140 708 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) Lus10042184 [exp] 42 / 0.0005 AT1G29150 425 / 2e-148 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075500 [exp] 776 / 0 AT3G61140 708 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) Potri.002G154500 [exp] 773 / 0 AT3G61140 681 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) Potri.013G020300 [exp] 46 / 4e-05 AT1G29150 634 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.008G042400 [exp] 43 / 0.0003 AT1G29150 611 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.010G164200 [exp] 43 / 0.0003 AT1G29150 634 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF10602 [flax] [poplar] RPN7 26S proteasome subunit RPN7 CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10036566 pacid=23174349 polypeptide=Lus10036566 locus=Lus10036566.g ID=Lus10036566.BGIv1.0 annot-version=v1.0 ATGGAGGCAGACGACGAGATTTACGCCAATGGCGTCGACGATGCAAGCCGTAGCAGGCCGATTATTAGTGGCGAACAGCTCGATATCGAAGCCTATGCTG GCTTATACACTGGGAGGACGAAGATAACGCGCCTTATCTTTATCGCCGACCACTGCGGAAACCCTTCTATGCAAACGGAAGCGCTCAGGATGGCCTACGA CGAGATCAAGAAGGGCGAGAACACGCAGCAGTTTCGAGAAATCGTGCAGAAGATCGACGGGAGGCTTGGGCCTAACTACGCCATGGATAGTGGCTGGTGT GAGATGGTGGATCGAAGAGCTGAGCAAAGGAAGGAGAAGCTCGAGAATGAACTCAATGCGTACCGGACAAATCTGATAAAGGAAAGCATAAGAATGGGAT ACAACGATTTTGGGGATTTCTACTATGCCCACGGAGCACTTGGAGATGCTTTTAAGAGTTACGTTCGGACTCGTGATTATTGCACAACGTCAAAGCACAT TATCCATATGTGTATGAGTGCAATTCTCGTCAGCATTGAGATGGGTCAGTTTACTCATGTTACAAGTTATGTCAGCAAAGCAGAACAGAGTGAGGGACTT GAACCTGCTACAACTGCAAAGTTGAAGTGTGCTGCTGGATTGGCACATCTAGAGGCTAAGAAATACAAGCTTGCTGCTAGAAAGTTCTTGGAAGTGGGTC CTGAGTTAGGAAATACATACAATGAAGTTATTGCATCCCAGGATGTTGCAACATATGGTGGGCTTTGTGCACTTGCAAGTTTTGACCGTACAGAGTTAAA GAACAAGGTAATAGACAACATCAACTTCAGAAATTTCTTGGAATTAGTACCTGAAGTTAGAGAGCTCATTCATGATTTCTATTCAAGCCACTATGCTTCC TGTCTAGATTACTTGGATAATCTGAAAACAAACCTGATGCTGGACATCCATTTGCACGATCATGTTGAGACACTATACGATCAAATTCGAAACAAGGCCC TGATTCAGTACACTCACCCCTTTGTGTCTGTTGACCTGAACATGATGGCCAATGCTTTCAAAACAAGCGTTGCTGGGCTAGAGAAAGAACTTGCAGATTT GATTACTGAGAACCAAATACAGGCTCGTATAGACTCCCACAACAAGGTTCTCTATGCACGTCATGCTGACCAGAGAAACTCCACCTTTCAACGGGTTCTG CAGACGGGCAGTGAATTCGACAGGGATGTTCGAGCAATGCTACTGAGGGCAAGTCTGATCAAGCATGAGCACGGTGTTAGAGCATCCAGGAAGCTATGA
AA sequence Show only first row Show all	>Lus10036566 pacid=23174349 polypeptide=Lus10036566 locus=Lus10036566.g ID=Lus10036566.BGIv1.0 annot-version=v1.0 MEADDEIYANGVDDASRSRPIISGEQLDIEAYAGLYTGRTKITRLIFIADHCGNPSMQTEALRMAYDEIKKGENTQQFREIVQKIDGRLGPNYAMDSGWC EMVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQSEGL EPATTAKLKCAAGLAHLEAKKYKLAARKFLEVGPELGNTYNEVIASQDVATYGGLCALASFDRTELKNKVIDNINFRNFLELVPEVRELIHDFYSSHYAS CLDYLDNLKTNLMLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLNMMANAFKTSVAGLEKELADLITENQIQARIDSHNKVLYARHADQRNSTFQRVL QTGSEFDRDVRAMLLRASLIKHEHGVRASRKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Lus10036566 [exp]	0	1
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	2.0	0.9617
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10028188 [exp]	2.8	0.9472
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	2.8	0.9604
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10012997 [exp]	4.5	0.9456
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10004942 [exp]	5.2	0.9461
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10035790 [exp]	5.5	0.9503
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10015106 [exp]	6.3	0.9505
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	6.9	0.9520
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007267 [exp]	7.2	0.9417
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10001681 [exp]	8.0	0.9512

Compare expression of checked genes

Lus10036566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.