Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00730 924 / 0 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT3G61150 869 / 0 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT4G04890 663 / 0 HD PDF2 protodermal factor 2 (.1) AT4G21750 645 / 0 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 635 / 0 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT1G73360 511 / 2e-171 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 492 / 2e-164 HD HDG12 homeodomain GLABROUS 12 (.1) AT2G32370 463 / 1e-152 HD HDG3 homeodomain GLABROUS 3 (.1) AT5G52170 434 / 4e-142 HD HDG7 homeodomain GLABROUS 7 (.1) AT1G79840 374 / 5e-118 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027175 [exp] 642 / 0 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10006765 [exp] 642 / 0 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10027437 [exp] 639 / 0 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10039667 [exp] 637 / 0 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10020059 [exp] 633 / 0 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10007650 [exp] 621 / 0 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10005759 [exp] 619 / 0 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10031321 [exp] 599 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10011440 [exp] 495 / 1e-164 AT1G79840 827 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075200 [exp] 1154 / 0 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 1145 / 0 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G141800 [exp] 759 / 0 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G139300 [exp] 749 / 0 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G152000 [exp] 690 / 0 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.002G230200 [exp] 687 / 0 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G020400 [exp] 668 / 0 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.011G025000 [exp] 643 / 0 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G034100 [exp] 592 / 0 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G038500 [exp] 563 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10036567 pacid=23174605 polypeptide=Lus10036567 locus=Lus10036567.g ID=Lus10036567.BGIv1.0 annot-version=v1.0 ATGAGTTTTGGCTTCCTTGAAAACGGTAGCCCCGGTGGCGGAAGATTCGTAGCTGACTACACTACCGCAACCACCATGTCCACTACCGGCGGGGGGATGG GTTCGCCTCCTCTCCTCACTCCCAATTTCCTATCTCCGAATTCCTTCTCCAAGTCCATGTTCAGCTCCCCAGGACTCTCCCTCGCTCTCGTACGGCCGCA ACCGAATATGGATGGAGTAAGACAAGGAGATTTTGGGAGGATTAGTGAGAACTATGAGACAAGTGTGGGGAGGATTAGAAGCAGGGAAGAGGAGCACGAT AGCAGATCTGGGAGTGATAACTTAGATGGGGCTTCTGGTGACGAACAGGATGCTGCTGATAAGCCTCCCAGGAAGAAGAGATACCACCGACACACTCCTC AGCAAATCCAAGAGCTTGAAGCGCTTTTCAAAGAGTGTCCTCATCCGGATGAGAAGCAGAGATTGGAGCTCAGCAAAAGACTTTGCCTGGAAACCAGGCA GGTGAAGTTCTGGTTCCAGAATCGACGAACCCAGATGAAGACTCAACTTGAACGCCATGAGAACACACTACTCCGGCAAGAAAACGACAAGCTTCGAGCT GAAAACATGTCAATTAGAGATGCTATGAGGAACCCAATGTGCTCCAACTGTGGTGGTCCTGCTATAATTGGTGACATCTCACTTGAAGAGCAGCATCTGA GGATAGAGAATGCAAGACTGAAAGACGAGCTTGACCGAGTTTGTGGTCTTGCTGGGAAATTCTTGGGTCGCCCTATCTCTTCTTTGAACAATTCATTGCC ACCTCCGATGCCCAACTCAAGTTTGGAGCTTGGAGTTGGAAACAATGACTTTGGTGGCTTCAGCACTGTGGCTGCTACATTACCCGTTGGACCTTCTGAT CATTTTGGAACTCCCACTGCCAACGGTTTGTCCATAGTTACTCAAAACAGGCCAGCTAGTGCTGGATCATTGGAGAGATCTATGCTCTTGGAACTCGCTT TGGCTGCCATGGATGAGCTGGTTAAAAAGGCTCAAACTGATGAGCCCCTTTGGCTCAAGAGCTTGGATGGTGGAAGGGAAATGTTGAACCATGAAGAGTA TCTGAGAACTTTCACACCATGCATCGGCTTGAAACCCAATGGGTTTGTCACTGAAGCTTCTAGAGAGACTGGTATGGTGATCATCAACAGTTTGGCACTT GTTGAGACTCTGATGGACTCAAATCGGTGGGCAGAAATGTTTCCCTGTATGATTGCCAGAACATCTACTACTGATGTCATATCTAACGGGATGGGGGGAA CTCGAAATGGCTCACTTCAGTTGATGCACGCTGAGCTCCAAGTTCTATCTCCTTTGGTCCCGGTTCGTGAGGTAAATTTCCTGCGATTCTTCGTTGATGT GTCCGTAGACGCCATTCGAGAAGTTTCGGGCGGCCCACCGATATTTCTCAGCTGCAGGAGGCTTCCTTCTGGCTGTGTGGTGCAAGATATGCCTAATGGC TACTCCAAGGTGACGTGGGTGGAACACGGAGAGTATGAGGAAAGCCAAATCCATCAGCTTTACCGGCTGTTGATCCAATCCGGAATGGGATTCGGTGCCC AAAGATGGGTAGCCACCCTTCAACGCCAGTGCGAGTGTCTAGCAATTCTCATGTCATCGACTGTTCCTGCTAGAGACCACACCGCTGCAATAACGGCGAG CGGGCGGCGGAGCATGCTGAAGTTGGCCCAAAGAATGACTGACAACTTCTGCGCCGGGGTGTGTGCGTCGACGGTGCACAAGTGGAACAAGCTCAACGGC GGGAACGTGGAAGAGGACGTTCGGGTGATGACGAGGAAAAGCGTCGACGATCCAGGGGAGCCTCCTGGTATCGTCCTTAGCGCGGCCACCTCGGTTTGGC TGCCGGTGTCACCCCAGTTTGGCTGCCGGTGTCACCCCAGCGGCTGTTTGACTTTCTTAGGGACGAAGTCGATGAACGCGAACCAGAGCAGCATGCTAAT ACTGCAGGAGACATGCGTAGACGCTGCGGGGTCGCTTGTGGTGTACGCGCCGGTGGATATTCCGGCAATGCACGTTGTGATGAACGGAGGGGATTCAGCT TACGTGGCTCTCCTTCCTTCAGGGTTCGCTATTGTACCCGATGGTCCAGGGCGGAGGTCCTTGGGATCGACAGAGGACGACGCCAACGATAATAATGGAG GGGGGCAGACGAGGGCGGCAGCAAGTGGGTCGCTGCTGACGGTGGCGTTTCAGATACTGGTGAATAGCCTGCCGACGGCGAAGCTGACGGTGGAGTCGGT GGAAACTGTGAACAACTTGATTTCATGCACCGTCCAGAAGATAAAAGCGGCACTTCAATGCGAGAGCTGA
AA sequence Show only first row Show all	>Lus10036567 pacid=23174605 polypeptide=Lus10036567 locus=Lus10036567.g ID=Lus10036567.BGIv1.0 annot-version=v1.0 MSFGFLENGSPGGGRFVADYTTATTMSTTGGGMGSPPLLTPNFLSPNSFSKSMFSSPGLSLALVRPQPNMDGVRQGDFGRISENYETSVGRIRSREEEHD SRSGSDNLDGASGDEQDAADKPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRA ENMSIRDAMRNPMCSNCGGPAIIGDISLEEQHLRIENARLKDELDRVCGLAGKFLGRPISSLNNSLPPPMPNSSLELGVGNNDFGGFSTVAATLPVGPSD HFGTPTANGLSIVTQNRPASAGSLERSMLLELALAAMDELVKKAQTDEPLWLKSLDGGREMLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLAL VETLMDSNRWAEMFPCMIARTSTTDVISNGMGGTRNGSLQLMHAELQVLSPLVPVREVNFLRFFVDVSVDAIREVSGGPPIFLSCRRLPSGCVVQDMPNG YSKVTWVEHGEYEESQIHQLYRLLIQSGMGFGAQRWVATLQRQCECLAILMSSTVPARDHTAAITASGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNG GNVEEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQFGCRCHPSGCLTFLGTKSMNANQSSMLILQETCVDAAGSLVVYAPVDIPAMHVVMNGGDSA YVALLPSGFAIVPDGPGRRSLGSTEDDANDNNGGGQTRAAASGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10036567 [exp]	0	1
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10041362 [exp]	1.0	0.9382
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10001153 [exp]	1.4	0.9098
AT4G30400			RING/U-box superfamily protein...		Lus10008899 [exp]	3.5	0.9002
AT4G31690	B3	REM9	Transcriptional factor B3 fami...		Lus10042406 [exp]	4.5	0.8846
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10039667 [exp]	8.4	0.8792
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10033561 [exp]	14.5	0.8747
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10043080 [exp]	15.5	0.8590
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10015382 [exp]	16.9	0.8656
AT1G12330			unknown protein		Lus10024559 [exp]	17.7	0.8216
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10014538 [exp]	19.1	0.7712

Compare expression of checked genes

Lus10036567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.