Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61180 295 / 1e-97 RING/U-box superfamily protein (.1) AT4G11680 294 / 7e-97 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G12760 285 / 3e-94 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT1G63170 278 / 9e-91 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G68070 228 / 8e-72 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G01735 218 / 8e-68 RIE1 RING-finger protein for embryogenesis (.1) AT1G80400 112 / 1e-27 RING/U-box superfamily protein (.1) AT4G26580 107 / 4e-26 RING/U-box superfamily protein (.1.2) AT5G55970 106 / 1e-25 RING/U-box superfamily protein (.1.2) AT4G32600 104 / 2e-24 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041359 [exp] 489 / 1e-173 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10006313 [exp] 262 / 7e-85 AT4G11680 456 / 8e-161 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10021801 [exp] 222 / 5e-69 AT1G68070 478 / 1e-169 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10034587 [exp] 216 / 4e-65 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10012427 [exp] 140 / 1e-40 AT3G61180 125 / 5e-36 RING/U-box superfamily protein (.1) Lus10029582 [exp] 144 / 8e-40 AT3G61180 315 / 3e-106 RING/U-box superfamily protein (.1) Lus10011475 [exp] 112 / 2e-27 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10013144 [exp] 105 / 9e-25 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10022567 [exp] 100 / 2e-23 AT5G55970 418 / 1e-146 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075000 [exp] 296 / 8e-98 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.002G155200 [exp] 288 / 8e-95 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.003G123300 [exp] 286 / 1e-93 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.008G134900 [exp] 234 / 2e-74 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G106300 [exp] 220 / 1e-68 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.001G371200 [exp] 113 / 3e-28 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.018G034400 [exp] 113 / 9e-28 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.006G247000 [exp] 112 / 2e-27 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.011G094800 [exp] 103 / 7e-25 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.004G122000 [exp] 65 / 2e-12 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10036569 pacid=23174511 polypeptide=Lus10036569 locus=Lus10036569.g ID=Lus10036569.BGIv1.0 annot-version=v1.0 ATGCAATCGTCAACTCCGTCCAGTCTGCCTCCGTCTCCGGACGTCACATCGCCGCTCCTGACTCGCTCGATTGCCGACCGCCTGCTCCGAGGCCGGGGCC TCCTCAGCAGTCCGTCGATGCCTCTCCGCGGGCTTCTGAGTGGAGCGAGAAGCCGTCGAATGTTGCTCCAGGAGCCTTCCGTTAGGGTCCGAGAGAACGC AGCTGAGCAGCTCGAGGAGCGGCAGACTGACTGGTCCTACTCCACTCCTGTAATCCTGCTGGATGTGCTGTGGAACCTGGCGTTCGTCGGAATCACGGCT GTTTCTCTGGTGATGAGCGCGGATGAGAAGCCCGGGGTGCCGTTGAGGCTGTGGATCGTGGGATACGGTCTTCTGTGTTTGTTTCACGTCGGGTGCGTCG TTGGCGAGTATAGGCGGCGGCGGCAGCGGCTTCCCGGAAGGAGGTTAGGGTTGGTGGATAGTGATGGTCTGAGCTCCGGATCTGGGAGCGATGATGCTGA TTCCGTGGATTACCAGACTCGTGATGCTGGAAATCATGATGAACAGAGTTCCACGAAGCAGCTGGAATCTGCAAATACGATGTTTTCACTCATCTGGTGG CTCGTTGGGTTCTATTGGATCACTGATGCAGGGCAGAATCCGATGCACGATTCCCCTTGGCTGTACTGGCTTTGTGTTGCATTCCTTACTTTTGATGTTA TCTTTGTTATTATCTGCGTTGCTATTGCTTGTCTCATTGGCGTTGCTATCTGCTGCTGTCTTTCTTGTATCATTTCAGTCTTGTATGCCATAACAGACCA GGAAGGAGCAACAAAGGAAGAGATTGATCAATTGCCGAAATTCAAGTTTTGCAGGGTACGAGATGTAAAATTCTCTGATGAGGAGAGTCAAGCACCAGCT GGAGAGTTCATGTCTAAATGCGATGATTTGCTTATTGAGCTTTCTCTCCCTGAAGAGGATGCAGAATGCTGCATTTGCCTCTCTTCCTATGATGATGAAA CCGAAGTGCGCGAACTTCCATGTCGGCACCATTTCCACTGTACTTGTATAGACAAGTGGCTCTACATCAACGCTACATGTCCGCTCTGCAAGTTTAACAT ATCCAAGGCAGGCAACCTGCAGGGCTCAAGCCAACAAGTGTAG
AA sequence Show only first row Show all	>Lus10036569 pacid=23174511 polypeptide=Lus10036569 locus=Lus10036569.g ID=Lus10036569.BGIv1.0 annot-version=v1.0 MQSSTPSSLPPSPDVTSPLLTRSIADRLLRGRGLLSSPSMPLRGLLSGARSRRMLLQEPSVRVRENAAEQLEERQTDWSYSTPVILLDVLWNLAFVGITA VSLVMSADEKPGVPLRLWIVGYGLLCLFHVGCVVGEYRRRRQRLPGRRLGLVDSDGLSSGSGSDDADSVDYQTRDAGNHDEQSSTKQLESANTMFSLIWW LVGFYWITDAGQNPMHDSPWLYWLCVAFLTFDVIFVIICVAIACLIGVAICCCLSCIISVLYAITDQEGATKEEIDQLPKFKFCRVRDVKFSDEESQAPA GEFMSKCDDLLIELSLPEEDAECCICLSSYDDETEVRELPCRHHFHCTCIDKWLYINATCPLCKFNISKAGNLQGSSQQV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61180			RING/U-box superfamily protein...		Lus10036569 [exp]	0	1
AT3G52820		ATPAP22, PAP22	purple acid phosphatase 22 (.1...		Lus10021377 [exp]	5.7	0.7415
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10040925 [exp]	7.7	0.8244
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10009819 [exp]	8.6	0.8230
AT2G01680			Ankyrin repeat family protein ...		Lus10021814 [exp]	16.0	0.7953
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10020053 [exp]	16.7	0.7702
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10022786 [exp]	27.5	0.7263
AT1G16840			unknown protein		Lus10034821 [exp]	31.3	0.6745
AT2G01890		PAP8, ATPAP8	purple acid phosphatase 8 (.1....		Lus10019133 [exp]	39.3	0.6885
AT1G49470			Family of unknown function (DU...		Lus10023842 [exp]	48.6	0.7469
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022360 [exp]	51.1	0.7540

Compare expression of checked genes

Lus10036569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.