Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45770 541 / 0 FRD4, CPFTSY FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) AT5G03940 130 / 1e-32 SRP54CP, CPSRP54, FFC SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) AT1G15310 103 / 1e-23 SRP54-1, ATHSRP54A signal recognition particle 54 kDa subunit (.1) AT1G48900 100 / 1e-22 Signal recognition particle, SRP54 subunit protein (.1.2) AT5G49500 98 / 7e-22 Signal recognition particle, SRP54 subunit protein (.1) AT4G30600 74 / 8e-14 signal recognition particle receptor alpha subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041358 [exp] 631 / 0 AT2G45770 583 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Lus10003676 [exp] 310 / 3e-104 AT2G45770 273 / 4e-91 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Lus10021346 [exp] 129 / 3e-32 AT5G03940 903 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10017023 [exp] 128 / 6e-32 AT5G03940 892 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10016213 [exp] 106 / 2e-24 AT1G48900 890 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10029330 [exp] 105 / 2e-24 AT1G48900 816 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10017891 [exp] 71 / 7e-13 AT4G30600 933 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Lus10035066 [exp] 69 / 3e-12 AT4G30600 943 / 0.0 signal recognition particle receptor alpha subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G078800 [exp] 557 / 0 AT2G45770 593 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Potri.002G155400 [exp] 198 / 5e-62 AT2G45770 215 / 1e-69 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Potri.006G211500 [exp] 124 / 8e-31 AT5G03940 859 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.016G078600 [exp] 124 / 1e-30 AT5G03940 928 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.001G253500 [exp] 101 / 6e-23 AT1G48900 882 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.016G112800 [exp] 98 / 8e-22 AT1G48900 887 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.006G183600 [exp] 68 / 4e-12 AT4G30600 869 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.018G105900 [exp] 66 / 2e-11 AT4G30600 856 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.009G047902 [exp] 52 / 4e-07 AT1G48900 487 / 7e-171 Signal recognition particle, SRP54 subunit protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00448 [flax] [poplar] SRP54 SRP54-type protein, GTPase domain CL0023 [flax] [poplar] PF02881 [flax] [poplar] SRP54_N SRP54-type protein, helical bundle domain
Representative CDS sequence Show only first row Show all	>Lus10036570 pacid=23174434 polypeptide=Lus10036570 locus=Lus10036570.g ID=Lus10036570.BGIv1.0 annot-version=v1.0 ATGGGTGTTGGAAAAAAACACTGTTTGATTTCCTTGGCCACATTTTTATTTGAGACCTGGACAAAGTTACTTTCGGGCCGGGAGCAGCGGGTATTTGCCA TTTGGCCCATAGAAGGCCCATCAATTGTTCTGTGTAGGGACACAAACCCGCAACTCTTCTCCACTTCCGGGAGCCAGACTGTCTCCGTTCACGGCAGAGC AAGAACGACTAGGTTCAAATGCTCGGCGGCAACGGGGACGGGGTTCTTCAGCCGGCTGGGGCGATTGATAAAAGAGAAGGCGAAAAGCGACGTGGAGAAG ATCGTCTCCGGATTCTCCAAAACTAGGGACAATCTCGCTGTCATCGACGAACTCCTCCTCTACTGGAACCTCTCCGAGACTGACAGAGTCCTCGACGAGC TCGAGGAGATTCTTCTGGTGGCTGACTTTGGGCCGAAGATCACTATCAAGATTGTGGAGAGTTTGCGGGAGGATATACTGGCGGGGAAGCTCAAATCAGG GACTGAAATCAAGGAAGCTCTGAAGAGTCGTGTGCTGGATTTGTTAGTCAAGAAGGGGAGCAAGACTGAGCTTCAACTTGGATTCAGGAAACCGGCTGTG ATTATGATAGTTGGTGTTAATGGAGGTGGGAAAACCACATCTCTTGGTAAGCTAGCATATAGACTGAAGAATGAAGGAGCGAAGATATTGATTGCAGCAG GTGATACATTCAGGGCAGCTGCTAGTGATCAGTTAGCTTGTAGTGATCAGTTGGAGATATGGGCTGAAAGGACCGGATGTGAAATTGTTGTGGCTGAAGA AGAGAAGGCAAAAGCCGCATCAGTTCTTTCACGAGCTGTAAAACGAGGAAAGGAGCAGGGCTTTGATATTGTTCTGTGCGACACTTCTGGACGACTCCAC ACTAATTATAGCCTCATGGAAGAGTTGGTAGCATGTAAAAAAGCCGTGGGCAAAGTAGTTCCTGGTGCACCAAATGAGATATTGCTAGTGCTTGATGGAA ACACGGGTCTCAATATGCTTCCTCAAGCAAGAGAATTCAACGAAGTAATTGGGATAACAGGTTTCGTTTTGACCAAGCTCGATGGCTCTGCACGGGGCGG ATGCGTGGTAATGCCTGGATTCACCGATATGCCCGCATATTATTATCTATCTCTCGAGTTATGGGATGAATTCAAACTCGGAACTCTATTGATGCAGGTC AGTGTAGTAGATGAGCTTGGTATCCCAGTGAAGTTCGTGGGCGTCGGGGAAGGTGTAGAAGACCTTCAACCTTTTGATGCGGAGGCTTTTGTGAATGCCA TATTTTCTTGA
AA sequence Show only first row Show all	>Lus10036570 pacid=23174434 polypeptide=Lus10036570 locus=Lus10036570.g ID=Lus10036570.BGIv1.0 annot-version=v1.0 MGVGKKHCLISLATFLFETWTKLLSGREQRVFAIWPIEGPSIVLCRDTNPQLFSTSGSQTVSVHGRARTTRFKCSAATGTGFFSRLGRLIKEKAKSDVEK IVSGFSKTRDNLAVIDELLLYWNLSETDRVLDELEEILLVADFGPKITIKIVESLREDILAGKLKSGTEIKEALKSRVLDLLVKKGSKTELQLGFRKPAV IMIVGVNGGGKTTSLGKLAYRLKNEGAKILIAAGDTFRAAASDQLACSDQLEIWAERTGCEIVVAEEEKAKAASVLSRAVKRGKEQGFDIVLCDTSGRLH TNYSLMEELVACKKAVGKVVPGAPNEILLVLDGNTGLNMLPQAREFNEVIGITGFVLTKLDGSARGGCVVMPGFTDMPAYYYLSLELWDEFKLGTLLMQV SVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036570 [exp]	0	1
AT5G11580			Regulator of chromosome conden...		Lus10038724 [exp]	1.0	0.9561
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10035045 [exp]	1.4	0.9415
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10007194 [exp]	2.8	0.9129
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Lus10006936 [exp]	4.5	0.8898
AT2G24395			chaperone protein dnaJ-related...		Lus10020173 [exp]	5.1	0.8872
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10027278 [exp]	5.5	0.9193
AT1G27510			Protein of unknown function (D...		Lus10039967 [exp]	8.1	0.9024
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10040554 [exp]	8.4	0.8865
AT3G17170		RFC3	REGULATOR OF FATTY-ACID COMPOS...		Lus10017084 [exp]	8.9	0.8972
AT1G56180			unknown protein		Lus10006532 [exp]	10.6	0.9002

Compare expression of checked genes

Lus10036570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.