Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61190 87 / 2e-21 BAP1 BON association protein 1 (.1.2) AT2G45760 87 / 4e-21 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) AT2G13350 52 / 7e-08 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G04360 49 / 9e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G15755 47 / 2e-06 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G33320 47 / 3e-06 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G04540 44 / 3e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040923 [exp] 276 / 3e-95 AT2G45760 110 / 4e-30 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10009818 [exp] 192 / 6e-62 AT2G45760 120 / 6e-34 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10040924 [exp] 190 / 4e-61 AT2G45760 119 / 3e-33 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10003570 [exp] 51 / 2e-07 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 49 / 5e-07 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014466 [exp] 42 / 0.0002 AT1G04540 245 / 7e-76 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10027502 [exp] 41 / 0.0002 AT5G23950 164 / 8e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G155300 [exp] 155 / 7e-48 AT2G45760 120 / 4e-34 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.014G078700 [exp] 148 / 2e-45 AT2G45760 116 / 1e-32 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.014G078600 [exp] 144 / 7e-44 AT2G45760 105 / 2e-28 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.010G024200 [exp] 62 / 2e-11 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 54 / 9e-09 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G065300 [exp] 50 / 2e-07 AT2G13350 261 / 6e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G172300 [exp] 50 / 3e-07 AT2G33320 265 / 8e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G021300 [exp] 48 / 1e-06 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.003G160400 [exp] 46 / 7e-06 AT3G16510 72 / 8e-14 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.005G026700 [exp] 45 / 1e-05 AT1G09070 148 / 3e-42 soybean gene regulated by cold-2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036571 pacid=23174543 polypeptide=Lus10036571 locus=Lus10036571.g ID=Lus10036571.BGIv1.0 annot-version=v1.0 ATGTCGAAATCCAGGACTCTCGAATTCACGATTCTCTCGGCGGAAGACCTCAGCATCAACGGGAGATCCGTCAAGAAGAACGCATTCGCTCTGGTCAGAA CCGACCCGTTCAATTCCAAATCGACCGGGGCGGACTCCGACGGCGGGAGTTACCCTCGCTGGAACGAGAAGCTAGTCGTCGGGTTGCTGGAGAGGACTCC ATCCGTGACAGTGGAGGTTCAATGCAAGGTCGGATCCGGAAACAGAGTGGTCGGCACGGCCACCGTTCCGGTCTCGGATTTCTTGGGAGACCTGACGCCG GAGAATTACCTGCACTTTTTGAGCTACAGGTTGCGGGATCCGCGTGGGGTGAGGAATGGAATTATTAATTTTTCTGTTAGGGTTAGCGGCGGCGGAAGCG GGGGGATTGGAGATTATGGCTGCTCGGTGGCAGCGAGGAAGAAGGAGGCGTCGGGATTTGGAGGTGGTTATGCTGCTTCTTCTACTCCTTCTTGGAAGAG GACGCCGTCGTCGTCGTGGGGAATGCCGGTGGCGCGTGATGGTGACGGTTGCGGTGGCGGCGGAGTGGTGACTGGCGTTCCTGTTTGGGGCCTGCATCGC ACTTGA
AA sequence Show only first row Show all	>Lus10036571 pacid=23174543 polypeptide=Lus10036571 locus=Lus10036571.g ID=Lus10036571.BGIv1.0 annot-version=v1.0 MSKSRTLEFTILSAEDLSINGRSVKKNAFALVRTDPFNSKSTGADSDGGSYPRWNEKLVVGLLERTPSVTVEVQCKVGSGNRVVGTATVPVSDFLGDLTP ENYLHFLSYRLRDPRGVRNGIINFSVRVSGGGSGGIGDYGCSVAARKKEASGFGGGYAASSTPSWKRTPSSSWGMPVARDGDGCGGGGVVTGVPVWGLHR T

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10036571 [exp]	0	1
AT4G04960			Concanavalin A-like lectin pro...		Lus10025441 [exp]	2.2	0.8750
AT5G48790			Domain of unknown function (DU...		Lus10007599 [exp]	2.4	0.8731
AT1G13360			unknown protein		Lus10034310 [exp]	4.0	0.8603
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10012224 [exp]	4.2	0.8663
AT1G18265			Protein of unknown function, D...		Lus10020457 [exp]	8.7	0.8475
AT1G34300			lectin protein kinase family p...		Lus10013252 [exp]	8.8	0.8381
AT1G21326			VQ motif-containing protein (....		Lus10042794 [exp]	9.2	0.7981
AT2G36320			A20/AN1-like zinc finger famil...		Lus10020594 [exp]	11.0	0.8180
AT1G75800			Pathogenesis-related thaumatin...		Lus10017265 [exp]	13.0	0.7911
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10018819 [exp]	13.7	0.7936

Compare expression of checked genes

Lus10036571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.