Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT5G44160	266 / 3e-83	C2H2ZnF	AtIDD8, NUC	nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1)
AT1G03840	265 / 2e-82	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
AT5G66730	263 / 2e-81	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1)
AT3G50700	261 / 2e-81	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1)
AT1G55110	257 / 9e-80	C2H2ZnF	ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7	indeterminate(ID)-domain 7 (.1)
AT2G02080	256 / 7e-79	C2H2ZnF	ATIDD4	indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2)
AT2G02070	258 / 1e-78	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1)
AT5G03150	254 / 2e-78	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger protein (.1)
AT1G14580	253 / 2e-78	C2H2ZnF		C2H2-like zinc finger protein (.1.2)
AT3G45260	250 / 2e-77	C2H2ZnF		C2H2-like zinc finger protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10041356 [exp]	421 / 4e-137	AT1G03840	332 / 2e-103	Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Lus10010820 [exp]	266 / 1e-85	AT3G50700	349 / 2e-119	indeterminate(ID)-domain 2 (.1)
Lus10007168 [exp]	270 / 5e-84	AT5G66730	386 / 2e-129	INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1)
Lus10041723 [exp]	259 / 8e-80	AT3G50700	489 / 1e-170	indeterminate(ID)-domain 2 (.1)
Lus10019927 [exp]	257 / 2e-79	AT5G03150	386 / 6e-130	JACKDAW, C2H2-like zinc finger protein (.1)
Lus10004497 [exp]	256 / 2e-79	AT1G55110	341 / 5e-113	indeterminate(ID)-domain 7 (.1)
Lus10026497 [exp]	256 / 3e-79	AT5G03150	384 / 2e-129	JACKDAW, C2H2-like zinc finger protein (.1)
Lus10029904 [exp]	256 / 3e-79	AT1G55110	337 / 6e-112	indeterminate(ID)-domain 7 (.1)
Lus10018633 [exp]	253 / 3e-78	AT1G03840	365 / 2e-122	Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.002G208444 [exp]	364 / 9e-120	AT3G50700	311 / 2e-100	indeterminate(ID)-domain 2 (.1)
Potri.013G019200 [exp]	315 / 2e-101	AT3G50700	327 / 4e-107	indeterminate(ID)-domain 2 (.1)
Potri.005G027200 [exp]	304 / 4e-97	AT1G03840	300 / 7e-96	Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Potri.006G129300 [exp]	271 / 1e-84	AT5G03150	371 / 1e-123	JACKDAW, C2H2-like zinc finger protein (.1)
Potri.014G132700 [exp]	271 / 4e-84	AT1G03840	232 / 2e-69	Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Potri.017G017100 [exp]	269 / 4e-84	AT1G03840	459 / 1e-158	Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Potri.007G135000 [exp]	268 / 6e-84	AT1G03840	435 / 3e-149	Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Potri.001G069948 [exp]	267 / 3e-83	AT3G50700	334 / 5e-110	indeterminate(ID)-domain 2 (.1)
Potri.007G028800 [exp]	268 / 5e-83	AT5G66730	416 / 1e-140	INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1)
Potri.014G180600 [exp]	266 / 1e-82	AT3G50700	368 / 3e-123	indeterminate(ID)-domain 2 (.1)

PFAM info

Representative CDS sequence

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>Lus10036573 pacid=23174383 polypeptide=Lus10036573 locus=Lus10036573.g ID=Lus10036573.BGIv1.0 annot-version=v1.0

ATGGCCCTGTCACCAACGACGTTGATGGCGACGAATCGATTTGTGTGCGAGATATGCAACAAAGGGTTCCAAAGGGATCAGAACCTCCAGCTACACAGGA

GAGGGCACAACCTTCCGTGGAAGTTGAAGCAAAGGACGACGACTGAGGTGAGGAAGCGGGTGTACATATGCCCCGAACCCACATGCGTCCACCACAACCC

GGCTCGAGCTCTGGGGGACTTGACCGGGATCAAGAAGCATTTTAGTCGCAAACATGGGGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAAAAGTATGCC

GTTCAGTCTGACTGGAAAGCTCATCAGAAGACGTGTGGCACTAGGGAGTACAAGTGTGATTGTGGTACCATCTTCTCTAGGAGGGACAGTTTCATAACAC

ATAGAGCATTCTGCGACGCCTTGGCAGAAGAGAACAACAAAGTAAACCAACAAGGCCTAATGTCCAACAACAACAACAACAACCAAATGGCAGACTTAAT

GTCACCAAACTCCTCCTCCGCCGCCGGCGACTTCAACGCCAGCTTCGACCCGAAAAACCCTCTCAAATCCCTCCCTCAAGACCTCATCCCCATGCCTTTC

AAGCCCATGAACATGGGCGCCGCAGGAGGAATGTTCTCCACCTCCTCTGGAACCCTTTTCGGTGGGCCCCGCGGTGGTGGTAATAACGGCGGCATGCCAA

CCTCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC

AGCAGCAGCAACAGAGAATGGTTGGCGGCGGGATGATGAATCATTATCAGCAGCAGCAGCAGCAACTGTCGCTTGGGGAATCGGCTGTTGGGTTGGAGAA

GCCTATTTGGGATGTTTAATTTTTTATATACGTTTCCTTATATCTGTCTGGTTTTTTTGGGTTTACGATTATGATGATTTTTATTAG

AA sequence

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>Lus10036573 pacid=23174383 polypeptide=Lus10036573 locus=Lus10036573.g ID=Lus10036573.BGIv1.0 annot-version=v1.0

MALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYA

VQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNQQGLMSNNNNNNQMADLMSPNSSSAAGDFNASFDPKNPLKSLPQDLIPMPF

KPMNMGAAGGMFSTSSGTLFGGPRGGGNNGGMPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATENGWRRDDESLSAAAAATVAWGIGCWVGE

AYLGCLIFYIRFLISVWFFWVYDYDDFY

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10036573 [exp]	0	1

Lus10036573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10036573 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10036573 coexpression network