Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02970 530 / 0 ATWEE1, WEE1 WEE1 kinase homolog (.1) AT4G19110 97 / 3e-21 Protein kinase superfamily protein (.1.2.3) AT3G59410 95 / 3e-20 ATGCN2, GCN2 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) AT1G50240 94 / 7e-20 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT5G45430 92 / 1e-19 Protein kinase superfamily protein (.1.2) AT3G04530 88 / 3e-19 ATPPCK2, PEPCK2, PPCK2 phosphoenolpyruvate carboxylase kinase 2 (.1) AT3G12200 91 / 5e-19 ATNEK7 NIMA-related kinase 7 (.1.2) AT3G04810 88 / 3e-18 ATNEK2 NIMA-related kinase 2 (.1.2) AT5G18700 88 / 5e-18 RUK, EMB3013 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) AT1G53570 87 / 5e-18 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041354 [exp] 871 / 0 AT1G02970 553 / 0.0 WEE1 kinase homolog (.1) Lus10033278 [exp] 92 / 1e-19 AT4G19110 620 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012799 [exp] 92 / 2e-19 AT5G18700 960 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10039167 [exp] 91 / 5e-19 AT1G50240 952 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10013766 [exp] 91 / 6e-19 AT1G50240 1521 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10029657 [exp] 91 / 6e-19 AT4G08480 520 / 9e-180 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) Lus10042698 [exp] 90 / 7e-19 AT4G08500 518 / 5e-179 MAPK/ERK kinase kinase 1 (.1) Lus10038123 [exp] 90 / 8e-19 AT4G19110 555 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10008303 [exp] 90 / 9e-19 AT4G19110 616 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G208251 [exp] 600 / 0 AT1G02970 572 / 0.0 WEE1 kinase homolog (.1) Potri.014G132400 [exp] 542 / 0 AT1G02970 531 / 0.0 WEE1 kinase homolog (.1) Potri.003G101600 [exp] 100 / 1e-22 AT4G19110 689 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.007G128300 [exp] 101 / 3e-22 AT3G59410 1610 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) Potri.001G018700 [exp] 92 / 2e-19 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.008G195800 [exp] 91 / 4e-19 AT5G18700 1833 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Potri.008G166500 [exp] 87 / 5e-19 AT1G08650 287 / 2e-97 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.005G172200 [exp] 90 / 6e-19 AT4G08500 421 / 6e-141 MAPK/ERK kinase kinase 1 (.1) Potri.019G052500 [exp] 91 / 7e-19 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Potri.005G094200 [exp] 90 / 1e-18 AT3G13530 1979 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036576 pacid=23174503 polypeptide=Lus10036576 locus=Lus10036576.g ID=Lus10036576.BGIv1.0 annot-version=v1.0 ATGAAGGCAACATTGGCCGCGCACTTGCAAACTCAGCTAGGGGTTCCTCTCCAGAAGTACCAGCAGCAACCATCTGCTGCATCCAGCTCCAATCCATCTT CTCGCTTCCAGAGTCTACTGGAATCTGTGGCTACGGACGCGCCTCGTACTTCCTCCGAGATCGCCGATGTGGACCTCGACGACAAAGATTTCATTCTCAG CCAGGATTTCTTCTGTACTCCTGATTACATTACTCCAGACAACCAAAATCTGCTCAACAGCTTCGATAGCAACAAGGAAAACGTTCAGTGCCCTGAATCA CCGGAGAAACTCACCACTGTCAAAAGCAAAAAGCGGCGACAATATGCAGTAGATGAAACCTCAGACATTCCTTTTAGCCCCTCATTAGATCAGCTGTTAA TGTTGGACATAGGAACTGAAGCGAATGCATTTGGCTCACATGAAATGAAGACTGACCAAAAGTTTGCCGAAAGTAGGAAGCCTAAGAGCTATGTACCGCA GTCGGCTGTAGCTTTAAGGTGTCGTGTGATGCCTCCTCCATGCATTCAGAACCCATATCTATCAGAAGCTTCAACGACCGTCGTTGATCCTTTTAGCAAT CAAAGAGTGAAGTGTGCAGGTTACATTCTCCACTGGCTATTTACAATTTGGTGGTTCTTTACTGTAAATATTGGGTATGTTGCTTCTGAAATGCGGCTGA GATCGCTGAACTCCTTGATGTCGGATTCTACAGATATCTTTTCATCAGTTGCGGGTGGTAACGGTCTTTCAAGGTACCACACTGATTTTCACGAGCTTCA GCAAATTGGTGCTGGAAACTTCAGTCGGGTTTTCAAAGTTATGAGGAGACTTGATGGATGCTTGTATGCTGTGAAACATATTACTAGACAGTTGCACCTA GATGGACTCAGGCAGAAGGCACTCATGGAAGTTCAAGCTTTGGCTGCTTTAGGATGTCATGAGAACATTGTCGGATACTACTCTTCTTGGTTTGAAAATG AACAGCTATACATTCAGATGGAGTTATGTGATTACAGTTTATCTATTGAAACTTTGCAAAAGCGACTTACAGAAACAGAAGTGTTGGCTGTTCTGCACCA GATTGCAAAAGCACTAGTATACATACACGAAAGAGGAGTAGCGCATCTAGATGTGAAACCTGATAATATTTATGCCAAGAACGGAATTTACAAGCTAGGT GACTTTGGATGTTCAAGTCGCCTCGATAAAAGCCTTCCAATTGAAGAGGGTGATGCACGATATATGCCGCAAGAGATACTAAATGAGAACTACGATCATC TAGATAAAGTTGATATCTTCTCCCTGGGCGCTTCTATTTACGAGCTTGTAAGAGCTGTCCCTTTGCCAGAATCAGGATCCTTATATTTAAACCTCAAGGA GGGGAAATTACCACTCCTTCCGGGTCACTCGTTGCAGTTTCAAAACTTACTCAAGGCAATGGTAGACCCAGATCCTGTTCGGCGCCCTTCTGCAAGGGAT TTGGTAGAGAACCCTCTGTTTGGCAAAGTCGAAAGATGCTTGAGAACATAA
AA sequence Show only first row Show all	>Lus10036576 pacid=23174503 polypeptide=Lus10036576 locus=Lus10036576.g ID=Lus10036576.BGIv1.0 annot-version=v1.0 MKATLAAHLQTQLGVPLQKYQQQPSAASSSNPSSRFQSLLESVATDAPRTSSEIADVDLDDKDFILSQDFFCTPDYITPDNQNLLNSFDSNKENVQCPES PEKLTTVKSKKRRQYAVDETSDIPFSPSLDQLLMLDIGTEANAFGSHEMKTDQKFAESRKPKSYVPQSAVALRCRVMPPPCIQNPYLSEASTTVVDPFSN QRVKCAGYILHWLFTIWWFFTVNIGYVASEMRLRSLNSLMSDSTDIFSSVAGGNGLSRYHTDFHELQQIGAGNFSRVFKVMRRLDGCLYAVKHITRQLHL DGLRQKALMEVQALAALGCHENIVGYYSSWFENEQLYIQMELCDYSLSIETLQKRLTETEVLAVLHQIAKALVYIHERGVAHLDVKPDNIYAKNGIYKLG DFGCSSRLDKSLPIEEGDARYMPQEILNENYDHLDKVDIFSLGASIYELVRAVPLPESGSLYLNLKEGKLPLLPGHSLQFQNLLKAMVDPDPVRRPSARD LVENPLFGKVERCLRT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Lus10036576 [exp]	0	1
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10017720 [exp]	1.0	0.9646
AT3G20260			Protein of unknown function (D...		Lus10033354 [exp]	5.1	0.9397
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10024019 [exp]	6.7	0.9395
AT4G13690			unknown protein		Lus10000756 [exp]	8.9	0.9316
AT4G12540			unknown protein		Lus10038281 [exp]	10.4	0.8931
AT5G52800			DNA primases (.1.2.3)		Lus10038837 [exp]	11.5	0.9143
AT2G41710	AP2_ERF		Integrase-type DNA-binding sup...		Lus10000965 [exp]	13.0	0.8743
AT1G67180			zinc finger (C3HC4-type RING f...		Lus10034088 [exp]	13.4	0.9047
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10032119 [exp]	14.0	0.9086
AT5G57120			unknown protein		Lus10001627 [exp]	14.7	0.8794

Compare expression of checked genes

Lus10036576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.