Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27970 84 / 4e-21 CKS2 CDK-subunit 2 (.1) AT2G27960 78 / 2e-18 CKS1AT, CKS1 cyclin-dependent kinase-subunit 1 (.1) AT1G08170 76 / 2e-16 Histone superfamily protein (.1) AT2G37470 63 / 3e-12 Histone superfamily protein (.1) AT3G53650 62 / 3e-12 Histone superfamily protein (.1) AT2G28720 62 / 6e-12 Histone superfamily protein (.1) AT5G59910 62 / 9e-12 HTB4 Histone superfamily protein (.1) AT3G45980 61 / 2e-11 H2B, HTB9 HISTONE H2B, Histone superfamily protein (.1) AT1G07790 61 / 2e-11 HTB1 Histone superfamily protein (.1) AT3G46030 60 / 2e-11 HTB11 Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041351 [exp] 223 / 3e-73 AT1G08170 139 / 8e-41 Histone superfamily protein (.1) Lus10041349 [exp] 102 / 3e-27 AT2G27970 154 / 2e-50 CDK-subunit 2 (.1) Lus10021405 [exp] 84 / 1e-20 AT2G27970 154 / 1e-50 CDK-subunit 2 (.1) Lus10016159 [exp] 84 / 1e-20 AT2G27970 154 / 1e-50 CDK-subunit 2 (.1) Lus10023753 [exp] 61 / 1e-11 AT2G37470 203 / 7e-69 Histone superfamily protein (.1) Lus10017456 [exp] 60 / 4e-11 AT2G28720 226 / 1e-77 Histone superfamily protein (.1) Lus10005897 [exp] 60 / 5e-11 AT3G45980 244 / 1e-84 HISTONE H2B, Histone superfamily protein (.1) Lus10040855 [exp] 60 / 5e-11 AT3G45980 247 / 2e-85 HISTONE H2B, Histone superfamily protein (.1) Lus10037371 [exp] 60 / 5e-11 AT3G45980 233 / 3e-80 HISTONE H2B, Histone superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G004000 [exp] 91 / 1e-23 AT2G27960 166 / 2e-55 cyclin-dependent kinase-subunit 1 (.1) Potri.004G217500 [exp] 90 / 3e-23 AT2G27970 152 / 3e-50 CDK-subunit 2 (.1) Potri.001G212200 [exp] 73 / 6e-16 AT1G08170 129 / 1e-37 Histone superfamily protein (.1) Potri.010G230701 [exp] 61 / 1e-11 AT5G59910 191 / 3e-63 Histone superfamily protein (.1) Potri.008G030500 [exp] 61 / 2e-11 AT5G59910 190 / 4e-63 Histone superfamily protein (.1) Potri.008G030400 [exp] 61 / 2e-11 AT5G59910 191 / 2e-63 Histone superfamily protein (.1) Potri.017G123700 [exp] 60 / 3e-11 AT5G02570 188 / 2e-62 Histone superfamily protein (.1) Potri.009G028001 [exp] 60 / 4e-11 AT5G02570 188 / 2e-62 Histone superfamily protein (.1) Potri.008G029900 [exp] 60 / 4e-11 AT1G07790 177 / 3e-58 Histone superfamily protein (.1) Potri.010G231300 [exp] 60 / 4e-11 AT1G07790 177 / 3e-58 Histone superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00125 [flax] [poplar] Histone Core histone H2A/H2B/H3/H4 CL0012 [flax] [poplar] PF01111 [flax] [poplar] CKS Cyclin-dependent kinase regulatory subunit
Representative CDS sequence Show only first row Show all	>Lus10036579 pacid=23174633 polypeptide=Lus10036579 locus=Lus10036579.g ID=Lus10036579.BGIv1.0 annot-version=v1.0 ATGGCACCGAGGCGGCGGTCGACGGGGAGAGTGGTCGGAGTGCTTCGATCAACGAGGAAAGTGGTCAAGGAAACTGTTGAAGTCTCCATTCTTGATGGCG ACACCCAGGAGACTTCGACTCCGGCAGACATCAACCTTTTGGACACCAAAGAGTTAATTGACGTCGTTACCCCCACCGAAGCAGGACAAGAAGACACAAC CACCAACTCCACCACCTCCACCGTGAGAACCATCCCCGTGGAGGACGCTGGACCGGAACGGAAGGAAGAACAAGTCATGAGTGAAGATCATGATAAATTC GAAGAGACACAAAAGGAAGCAGAGAAGGAAGTACCAAGAAAGGAAGAAAAGAAAGCACCGGCGGAAAAGGACAAAAAGGTAAATAAGAAGAAGAGAAAGA GCCGATTTGTGGAAGGAGGGGAAGGGTACAGGAGGTACGTGTACAAGGTGATGAAGCAGGTGCATCCAGATATGAAGATATCCGGGGTTGCTATGAGCAT CATCAACAGTTTGATGAAGGACATGTTTGAGCGAATTGCTGACGAGGCTGCCACGCTGTCTCTGTGTGTGATTTTGGATTCGTTTCTGCAGAACGAATGG CGTGCAATAGGTGTTCAGCAGAGCCGAGGGTGGATCCACTACGCTATCCATCGACCTGAGCCACACATCATGCTTTTCAGGAGGCCTCTCAACTATGAAC AGCAGCAAGCGAAAGAGAACCAAGCTCTGTAG
AA sequence Show only first row Show all	>Lus10036579 pacid=23174633 polypeptide=Lus10036579 locus=Lus10036579.g ID=Lus10036579.BGIv1.0 annot-version=v1.0 MAPRRRSTGRVVGVLRSTRKVVKETVEVSILDGDTQETSTPADINLLDTKELIDVVTPTEAGQEDTTTNSTTSTVRTIPVEDAGPERKEEQVMSEDHDKF EETQKEAEKEVPRKEEKKAPAEKDKKVNKKKRKSRFVEGGEGYRRYVYKVMKQVHPDMKISGVAMSIINSLMKDMFERIADEAATLSLCVILDSFLQNEW RAIGVQQSRGWIHYAIHRPEPHIMLFRRPLNYEQQQAKENQAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10036579 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011979 [exp]	3.5	0.9691
AT5G03860		MLS	malate synthase (.1.2)		Lus10020565 [exp]	6.7	0.9603
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	8.1	0.9659
AT5G45690			Protein of unknown function (D...		Lus10005416 [exp]	10.4	0.9467
AT2G05910			Protein of unknown function (D...		Lus10033432 [exp]	10.4	0.9590
AT1G67910			unknown protein		Lus10023632 [exp]	11.3	0.9496
AT4G26400			RING/U-box superfamily protein...		Lus10043027 [exp]	11.6	0.9568
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039830 [exp]	12.6	0.9395
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10002256 [exp]	13.9	0.9383
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10005886 [exp]	14.7	0.9500

Compare expression of checked genes

Lus10036579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.