Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58025 145 / 2e-36 DNA-binding bromodomain-containing protein (.1.2.3) AT2G34900 47 / 2e-05 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) AT3G52280 45 / 0.0001 GTE6 general transcription factor group E6 (.1.2) AT5G63320 44 / 0.0003 NPX1 nuclear protein X1 (.1.2.3) AT5G65630 44 / 0.0004 GTE7 global transcription factor group E7 (.1) AT5G10550 43 / 0.0008 GTE2 global transcription factor group E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035798 [exp] 710 / 0 AT1G40087 101 / 1e-22 Plant transposase (Ptta/En/Spm family) (.1) Lus10035799 [exp] 160 / 7e-46 AT5G63690 191 / 1e-63 Nucleic acid-binding, OB-fold-like protein (.1) Lus10037368 [exp] 94 / 6e-20 AT1G58025 246 / 2e-74 DNA-binding bromodomain-containing protein (.1.2.3) Lus10035797 [exp] 64 / 1e-10 AT1G58025 162 / 1e-45 DNA-binding bromodomain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223700 [exp] 151 / 3e-38 AT1G58025 295 / 3e-92 DNA-binding bromodomain-containing protein (.1.2.3) Potri.014G083500 [exp] 55 / 1e-08 AT5G63690 200 / 5e-67 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G073800 [exp] 46 / 6e-05 AT2G34900 350 / 7e-119 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.001G335000 [exp] 45 / 0.0003 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.008G043000 [exp] 43 / 0.0005 AT2G34900 341 / 2e-115 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.010G219200 [exp] 43 / 0.0007 AT2G34900 333 / 2e-112 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10036580 pacid=23174684 polypeptide=Lus10036580 locus=Lus10036580.g ID=Lus10036580.BGIv1.0 annot-version=v1.0 ATGAACTGGATGTATGGAGATGTAGAGCAGACCAAAAAGTTAAAGCAAGGGAGGAAAGACGCGAGAATAGGGAGAAAGACCCGCTTGCTGCACAAACTTG TTGGAGTTGTGAGGATCAAGGCCCCATTGAATCTCACTCATATTGGGTGTCTCCACAAACGCCATGGTGAACTCCCCAATCTTCTTAATGTTCCCTCTCT TCCCTGCCCTCAGCACCATCTTCTTGCTGTTCCTGCTGTTGAAGAATATCCCATTCTCCAGCCTGATGATATCTCCCGCCTCAAACTGGAAATGCACCAC TGCAGTCTCGTCAGCTACCAACCGGAGCACGTCTTGCTCTCTCCTTCCGTCCTCATCCTGCTCTTATCCAGCATGATGAAAACCAAGCGGAAGCGTGGAC GTCCTAAGACCAAGAATGTGGCTTCTGTTGTTGCTGCTGCTGCTTCACCAGAACATGATGCTCCCTCTGCTGTACCTGTTACTGCTGCTGCTGAATCACC TCTCAGTGCGGCCGCAGCACTGAATGCTAATAAAGTGGCCTTCTTGAACCTTGTAGGCCAGATTGCTCAAGAAAATCTTGGACTGGACAAATCTACTAAT GATGCCGCTGCCCCTCAGGGAATTCCTTCTTCCTCCAACCACTCTAGTTCATCAGCTTCTTCTTTCTCAACTATAGGGGACGATTCATTCCATGCAGATG ATATTAACAGTAGGTTGGATGTGCAAGAATTGAACTTTATGCCAATTCAATCGATAGGCTGTAAGCGTGGTCGTCCTAGCAAAAGGGACGTGACAAACGG TGCTAGCGATGTTCAAGTTACCTCATCCACTGGACTGTATCCCCGGAACAGCAAAGATAAGAGATCCAGGACGTCATGCCAGGATCCCCGATACAATGAA AGAGAACTGAACATCGCCTTAACAGTCATTAAGAGGATCATGGAAATGGATGAAGCTGTATCATTCATTTCTCCTGTTGATCCTGTCCCTTCTGGATTTG TAAGTATCGGTCGTTTCACTGGTGCATTAATCGTAGCAATCAATGTCAAAGATACACCTATGGATTTTGGAACCATATGTAGCAATATTCAGGCTGGCTT CAAGTACCTAAATTCCTATGATGTCTATGCGGACGTGGAATGTATATGGGAGCACTGTTTGAAATATAACAAGAAAGGTGATTATATTGTATACCTTATG AAGAGGGTGAAGAAGAAGTTCCTGAAATACTGGACATCAGCTGGCCTTCATGCTGAAGTGCCAAAAAACGCTACTGGGCAACCTGATTTAATGCATAGTA ATGGCCACATGATGGAGGACATCAATTATGAGGGTAGTTGTGCAGTGAATCCCGTTGGTATTAGAATCCAGAAGCAACCAGCTCAGGTCCCTTCATCAAG CTGCAATCACCAGGCGCAGGTGATTCCATCTAGCTACAATCACCATGCACAGGTGCTTCCATCAAGCTACAGTCACCAGGCGCAGGTGCCTCCATCAAGC TACCGTCACCAGGTGCATGTGCTCAATCAAGCTACAGTCGCCAGGCTCAGGTACAGTTACGATTATCAGTTGCCACAACTGCAGCCAACCACGAGTTCCT CACCACAAGCCCACCAGTCGCAATCTAGAATCCAGGCCAACGATGCAGGACATTCTTATGCACACTCCGAGGACTCTAGGAAGCAGAGGATAAACTCACG TCAACTGTCAGTGGCTCCCACTTCAACGCATTCCATGCATCCATCGCAATCAAGTTCATACTATGTGGGACATCCTTTACACAGTGCTAGCCAGCAACAA CCATCTCGATTACTTGTTCAACAGAATGATGACGGACATCAAGGTTGGATGCCTACTCGGAATGGTACACTGGGACAAAATGGATTTATGTCCACAACTG CAGCTAACCCCACTATCACCAACCAAAGCCAACTTGTACCACAGAAACCTCCTGTTAGCCGTAGCCTGCAACATGTGCCAGATGTACCCGAGGAAAGCAT TAGACAGCACCAGCATCCTGAGCAGGTTGCTTTTGCTTCACATGCAGGGGGTATGTTCTCGTGCTGTTTGGTTTATGTAAATATGCCAAGTTTTGAGGAA TTTCATATCTGTGTTACCTGTGAGCCATGTGAAACACTGTGCGGTTTGCTCTTAATTCCTTTTCAAATGTCTGCTGGTCGCATAATGTCAGGTTGTGTAT TTCTGAGACTTGGTAGTTTAAAGTTACAGTTGCAGAGTAACTTTGAGACTGCTGTGCTTTTATTGCCTTTTTATCCTCTTTTCTCTCGTCTTCTGTAG
AA sequence Show only first row Show all	>Lus10036580 pacid=23174684 polypeptide=Lus10036580 locus=Lus10036580.g ID=Lus10036580.BGIv1.0 annot-version=v1.0 MNWMYGDVEQTKKLKQGRKDARIGRKTRLLHKLVGVVRIKAPLNLTHIGCLHKRHGELPNLLNVPSLPCPQHHLLAVPAVEEYPILQPDDISRLKLEMHH CSLVSYQPEHVLLSPSVLILLLSSMMKTKRKRGRPKTKNVASVVAAAASPEHDAPSAVPVTAAAESPLSAAAALNANKVAFLNLVGQIAQENLGLDKSTN DAAAPQGIPSSSNHSSSSASSFSTIGDDSFHADDINSRLDVQELNFMPIQSIGCKRGRPSKRDVTNGASDVQVTSSTGLYPRNSKDKRSRTSCQDPRYNE RELNIALTVIKRIMEMDEAVSFISPVDPVPSGFVSIGRFTGALIVAINVKDTPMDFGTICSNIQAGFKYLNSYDVYADVECIWEHCLKYNKKGDYIVYLM KRVKKKFLKYWTSAGLHAEVPKNATGQPDLMHSNGHMMEDINYEGSCAVNPVGIRIQKQPAQVPSSSCNHQAQVIPSSYNHHAQVLPSSYSHQAQVPPSS YRHQVHVLNQATVARLRYSYDYQLPQLQPTTSSSPQAHQSQSRIQANDAGHSYAHSEDSRKQRINSRQLSVAPTSTHSMHPSQSSSYYVGHPLHSASQQQ PSRLLVQQNDDGHQGWMPTRNGTLGQNGFMSTTAANPTITNQSQLVPQKPPVSRSLQHVPDVPEESIRQHQHPEQVAFASHAGGMFSCCLVYVNMPSFEE FHICVTCEPCETLCGLLLIPFQMSAGRIMSGCVFLRLGSLKLQLQSNFETAVLLLPFYPLFSRLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58025			DNA-binding bromodomain-contai...		Lus10036580 [exp]	0	1
					Lus10033430 [exp]	6.3	0.6163
AT5G22470			NAD+ ADP-ribosyltransferases;N...		Lus10043383 [exp]	9.2	0.6520
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10020381 [exp]	11.5	0.6566
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	24.3	0.6566
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10026155 [exp]	24.5	0.6050
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10006637 [exp]	34.6	0.5880
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10000555 [exp]	36.3	0.6044
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10015195 [exp]	43.6	0.5716
AT4G14615			unknown protein		Lus10021896 [exp]	45.9	0.6022
					Lus10012012 [exp]	48.2	0.6210

Compare expression of checked genes

Lus10036580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.