Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01090 836 / 0 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT3G29160 774 / 0 ATKIN11, AKIN11, SnRK1.2 SNF1-RELATED PROTEIN KINASE 1.2, SNF1 kinase homolog 11 (.1.2.3) AT5G39440 604 / 0 SnRK1.3 SNF1-related protein kinase 1.3 (.1) AT2G26980 273 / 5e-84 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 270 / 4e-82 Ca2+regulated serine-threonine protein kinase family protein (.1) AT4G24400 270 / 4e-82 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT3G17510 262 / 6e-79 CIPK1, SnRK3.16 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) AT5G25110 259 / 2e-77 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT1G01140 256 / 2e-76 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G35410 254 / 4e-76 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035801 [exp] 959 / 0 AT3G01090 920 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10001290 [exp] 904 / 0 AT3G01090 931 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10012696 [exp] 888 / 0 AT3G01090 905 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10035802 [exp] 568 / 0 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 468 / 4e-157 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 387 / 1e-125 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10029797 [exp] 255 / 2e-79 AT5G39050 78 / 9e-17 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10028115 [exp] 259 / 8e-78 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 259 / 2e-77 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G115900 [exp] 894 / 0 AT3G01090 879 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.017G087900 [exp] 880 / 0 AT3G01090 880 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.013G090800 [exp] 676 / 0 AT3G01090 728 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.001G222600 [exp] 272 / 8e-83 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.009G021000 [exp] 265 / 5e-80 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.010G002500 [exp] 263 / 3e-79 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Potri.014G104200 [exp] 260 / 2e-78 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.006G062800 [exp] 258 / 3e-77 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.002G177900 [exp] 257 / 4e-77 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.006G263500 [exp] 257 / 7e-77 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10036582 pacid=23174379 polypeptide=Lus10036582 locus=Lus10036582.g ID=Lus10036582.BGIv1.0 annot-version=v1.0 ATGGATGGATCATCGCACCGAGGCAATAGTGTGGATATGTTCTTATCCAATTACAAGCTTGGTAAAACTCTAGGAATTGGTTCCTTTGGCAAGGTGAAAA TTGCTGAGCATGCATTGACTGGACATAAAGTTGCCATCAAGATCCTTAATCGCCGTAAGATTAAAAATATGGAGATGGAAGAAAAAGTGAGACGAGAAAT CAAAATCTTAAGATTGTTTATGCATCCCCATATCATACGCTTGTACGAGGTTATTGAAACACCAACTGATATCTTTGTGGTCATGGAGTATGTTAAATCT GGGGAACTGTTTGATTATATTGTGGAAAAAGGGAGGTTACAGGAAGACGAGGCTCGCAATTTTTTCCAGCAGATAATTTCTGGCGTTGAGTACTGCCACA GGAATATGGTTGTTCACCGAGACTTAAAGCCTGAGAATTTACTTTTGGATTCTAAATGTAATGTCAAGATAGCTGATTTTGGACTGAGCAATATAATGAG AGACGGTCACTTTCTGAAGACAAGTTGTGGAAGTCCAAACTATGCCGCCCCAGAGGTAAAGGGTCTCATCACGGTTTTCATGTTCCCTCTAAACTGGAGG CTTGCGTGGATTACTTATGGCTACTCCATTCAAGTCATCTCTGGGAAATTATATGCTGGCCCTGAAGTGGATGTGTGGAGTTGTGGAGTTATATTGTACG CTCTTCTTTGTGGTACCCTCCCATATGATGATGAAAACATTCCCAACCTTTTTAAGAAAATAAAGGGAGGAATATACACTCTTCCTAGTCATTTATCACC CGGGACAAGAGATCTTATTCCTAGGATGCTTCTGGTTGATCCAATGAAGCGAATGACCATTCCTGAAATTCGTCAGCATCCATGGTTCCAAGCTCGTCTC CCGCGTTATTTGGCTGTGCCTCCACCAGACACAATGCAACAAGCTAAAAAGATTGATGAAGAGATTCTACAAGAAGTTATTAAAATGGGATTTGACAGGA ATCAACTTGTCGAATCACTTCGCAACAGAATACAGAATGAGGGTACTGTGGCATACTATTTGCTCTTGGATAATAGGTTCCGCGTCTCTAATGGTTATCT TGGTGCGGAGTTTCAAGAAACTATGGAATGTGGTTACAACCGTATGCATCCTAGTGAACCTGTTTCTCCGTCTGTTGGGCATCGGGCCCCTGGGTACATG GAGTATCAAGGCATGGGATTAAGATCACAACATCCTGTTGATAGGAAATGGGCACTTGGACTTCAGTCTCGAGCCCACCCACGTGAAATCATGACAGAAG TTCTCAAAGCTTTGCAAGAACTGAACGTCGGGTGGAAGAAGATTGGTCACTATAACATGAAGTGCAGGTGGATTCCTGGGAGCCCTGGACAGCATGCAGG GATGGTAAATGATCCAGTGCCGAATAATCATTTCTTCAGGGACGAATCTGCTATTATTGAGAATGACGGAGGGGCCAGAACACCAAATGTTGTGAAATTT GAAGTCCAGCGACCGGGTTCGCCAAGCTTCGATTACATACCGGAGTTACCTGTGTCCTGTTCGTCCGCGACGATTCTGTCTCCGAAGATCACTCTTTTTC CCGGCGCTGGATTCTGTATCGGCGTATCTGCTCACCACGGGGTTGTCGACGGTGAAACGCAAGCTATGTTCATGAAAGCTTGGGCTTATACTTGCAGGCA GATCGGAGATGAGGAAATCGAATTGCCGCAGGCACTCACTCCAGTCTTCGATCGGACGCGGATCACTGAAAATTCAGATGAAATTGCGCTGGAGTACTGG AACAATTGGTTCCAACTCCAACAGAAATTGTCAGGAACGGATCCGAATCCGAACCCTAGAAGCTTGGAGCCGCTGTGGATTTTGCTGCGAGCGACGTTCC ACTTCTCCAGGGAGAGAATCAATAAACTGAAAAAGGAATTGATTACGAAAATAACAAACCCTAATTATTTGTCGAGCTTCGTCATCACTCTGGCGCACGA CGCGGTTTGCATCGTGAAGGCGAAAAGGGCAACACAAGTCAGAGGCGATGACGCCACAACGATCCAGCTCGCGTTCACCGCGGATTTTAGATCTCGGTTG GAGCCTCCGGCGCCGGATAATTTCTTCGGCAACTGCGTGTCCCCTTTCGAGGTGCTGCTGAGGGCGGCAGCTGAAGGCGGAGGCACTGCCTATGCGGCGG GGAAGATCATAGAAACAATTAAGGTGGTGGAGAAAGGAGTGATGGTGGGAGCGAAGGAGAGGCTGGCTAATTTTCTGTTTACGGATAAATTCGAGTTTGC GATTGGGGTGTCCGGGTCGCCGAGGCTGGGGATGTATGGAGTTGATTTCGGGTGCGGAAGGGCGGCGAAGGTTGAGATCACGTCGACGGCAAGGACAGGA GCTATTTCGATGACGGAGAATAAAGACGGGAGCGGCGGAGTTGAGGTAGGGGTTGTGTTGAAGCAGGAAGAGATGGATATATTTTGTCGTGCGTTCACCG GAAGAGCGGGAAAATGCACCCTCTAG
AA sequence Show only first row Show all	>Lus10036582 pacid=23174379 polypeptide=Lus10036582 locus=Lus10036582.g ID=Lus10036582.BGIv1.0 annot-version=v1.0 MDGSSHRGNSVDMFLSNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIFVVMEYVKS GELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVKGLITVFMFPLNWR LAWITYGYSIQVISGKLYAGPEVDVWSCGVILYALLCGTLPYDDENIPNLFKKIKGGIYTLPSHLSPGTRDLIPRMLLVDPMKRMTIPEIRQHPWFQARL PRYLAVPPPDTMQQAKKIDEEILQEVIKMGFDRNQLVESLRNRIQNEGTVAYYLLLDNRFRVSNGYLGAEFQETMECGYNRMHPSEPVSPSVGHRAPGYM EYQGMGLRSQHPVDRKWALGLQSRAHPREIMTEVLKALQELNVGWKKIGHYNMKCRWIPGSPGQHAGMVNDPVPNNHFFRDESAIIENDGGARTPNVVKF EVQRPGSPSFDYIPELPVSCSSATILSPKITLFPGAGFCIGVSAHHGVVDGETQAMFMKAWAYTCRQIGDEEIELPQALTPVFDRTRITENSDEIALEYW NNWFQLQQKLSGTDPNPNPRSLEPLWILLRATFHFSRERINKLKKELITKITNPNYLSSFVITLAHDAVCIVKAKRATQVRGDDATTIQLAFTADFRSRL EPPAPDNFFGNCVSPFEVLLRAAAEGGGTAYAAGKIIETIKVVEKGVMVGAKERLANFLFTDKFEFAIGVSGSPRLGMYGVDFGCGRAAKVEITSTARTG AISMTENKDGSGGVEVGVVLKQEEMDIFCRAFTGRAGKCTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10036582 [exp]	0	1
AT5G42940			RING/U-box superfamily protein...		Lus10010372 [exp]	1.0	0.8280
AT1G54920			unknown protein		Lus10029936 [exp]	1.4	0.8189
AT4G18230			unknown protein		Lus10024587 [exp]	3.3	0.7668
AT1G21840		UREF	urease accessory protein F (.1...		Lus10039022 [exp]	3.9	0.8034
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10025484 [exp]	4.7	0.7460
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031311 [exp]	6.0	0.8136
AT1G02660			alpha/beta-Hydrolases superfam...		Lus10010031 [exp]	10.8	0.8134
AT3G09320			DHHC-type zinc finger family p...		Lus10024377 [exp]	13.6	0.7352
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10023694 [exp]	15.0	0.7824
AT3G17900			unknown protein		Lus10036712 [exp]	16.3	0.7889

Compare expression of checked genes

Lus10036582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.