Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26900 187 / 3e-55 BASS2 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) AT1G78560 180 / 2e-52 Sodium Bile acid symporter family (.1) AT4G22840 149 / 1e-40 Sodium Bile acid symporter family (.1) AT4G12030 145 / 3e-39 BAT5, BASS5 BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN 5, bile acid transporter 5 (.1.2) AT3G25410 134 / 3e-35 Sodium Bile acid symporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035803 [exp] 644 / 0 AT1G78560 224 / 5e-69 Sodium Bile acid symporter family (.1) Lus10006672 [exp] 186 / 2e-54 AT2G26900 603 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10007016 [exp] 184 / 6e-54 AT2G26900 610 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10005565 [exp] 182 / 2e-53 AT1G78560 549 / 0.0 Sodium Bile acid symporter family (.1) Lus10013700 [exp] 183 / 7e-51 AT1G78560 554 / 0.0 Sodium Bile acid symporter family (.1) Lus10038237 [exp] 134 / 3e-35 AT3G25410 544 / 0.0 Sodium Bile acid symporter family (.1) Lus10025862 [exp] 134 / 3e-35 AT3G25410 542 / 0.0 Sodium Bile acid symporter family (.1) Lus10028901 [exp] 125 / 5e-31 AT4G22840 464 / 4e-160 Sodium Bile acid symporter family (.1) Lus10008914 [exp] 117 / 2e-28 AT4G22840 466 / 3e-161 Sodium Bile acid symporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G008700 [exp] 434 / 4e-151 AT1G78560 238 / 2e-74 Sodium Bile acid symporter family (.1) Potri.018G074400 [exp] 193 / 3e-57 AT2G26900 554 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Potri.011G103200 [exp] 186 / 9e-55 AT1G78560 496 / 9e-176 Sodium Bile acid symporter family (.1) Potri.014G178000 [exp] 142 / 3e-38 AT3G25410 486 / 5e-171 Sodium Bile acid symporter family (.1) Potri.003G117300 [exp] 141 / 9e-38 AT4G22840 500 / 6e-177 Sodium Bile acid symporter family (.1) Potri.017G069350 [exp] 66 / 1e-12 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF01758 [flax] [poplar] SBF Sodium Bile acid symporter family
Representative CDS sequence Show only first row Show all	>Lus10036583 pacid=23174653 polypeptide=Lus10036583 locus=Lus10036583.g ID=Lus10036583.BGIv1.0 annot-version=v1.0 ATGTCTCTATCTCTCCTTCTCACTCCCTCCGCCACACTTCCCTTCAGGAATGACTCCCGCAGGAGCATCACACTTCGCAACCCCCAAACCCTCATCGCCA TTTCTCAACCACCAATCAATAAGTTGGCAACAATGTCCTCCAGGTTGAGAGCAACAGTCGACGATGGATCCGGGGAGCAGCTGAAGAAAAAAGAAGAAGC ACCAAGATGGGAAAATATGCTGTCCACGGCCACAAGCTTGTACCCTTTCTATGTAACCCTGGGTGGGATCGTGGCTTGCTTTAAGCCCGCCGCTTTCTCT TGGTTCGTCGGCAGGGCCCCTGCTTCTTACAGCTTCTCTCTTGCCTTCATCATGTTGTCTATGGGTCTCACTCTTCAGCTTAAGGACTTGCTGCGCTTGT TTATGCAGCGACCCCTCTCCATCCTATTTGGATGTGCTGCTCAGTATACAATTATGCCAGCATTGGGATTGGTTATCAGCAAATTCTTGGGACTTTCCCC TTCCCTTTCGGTAGGGCTCGTCTTGCTTGGGTGTTGCCCTGGTGGAACTGCGTCCAATGTGGTGACCTTAATCGCAGAAGGGGATGTTGCACTATCTATT GTAATGACCGTATGCACTACTCTTGGTGCAGTGCTGCTCACCCCACTCTTGACCAAGATTCTTGTCGGAGCTTTTGTCCCTGTTGACGCTGTCAAGCTAT CCATCAGCACTTTACAGGTGGTTGTTGCTCCAATAGTGCTAGGTTCATATCTGCAGAGTGCATTTCCTGCAGCGGTGAGAAGGAATGTAATTCGTCTTAA ATCCACAATGATCGATGCAACATTGGCATCAGATGCATCCTTCGTTCTACGCATCAAATCGGCCCTCTCTGGAGATTTAGGAACCATTGTGCTCTCAGTG GTATTGTTGCATCTGGCTGGATTTTTGGTAGGGTATTTCTCAGCTGCCATCGGAGGGTTTAAGGAACGACAAAGGCGCGCAATAGCAATCGAGGTTGGGA TGCAAAATTCATCACTGGGAGTCGTATTAGCGACGGCTCATTTCAGTTCATCAATGGTGGCATTACCTCCAGCTTTGTCGGCGGTGGTTATGAACATCAT GGGTAGCAGCCTTGGTTTCATCTGGAAACACATGGACCCTTCTTCTAATGATGATGATGATGATGCTGGGAATCAACTCGTCCAAGGACAGGAGGGATCA ACATAA
AA sequence Show only first row Show all	>Lus10036583 pacid=23174653 polypeptide=Lus10036583 locus=Lus10036583.g ID=Lus10036583.BGIv1.0 annot-version=v1.0 MSLSLLLTPSATLPFRNDSRRSITLRNPQTLIAISQPPINKLATMSSRLRATVDDGSGEQLKKKEEAPRWENMLSTATSLYPFYVTLGGIVACFKPAAFS WFVGRAPASYSFSLAFIMLSMGLTLQLKDLLRLFMQRPLSILFGCAAQYTIMPALGLVISKFLGLSPSLSVGLVLLGCCPGGTASNVVTLIAEGDVALSI VMTVCTTLGAVLLTPLLTKILVGAFVPVDAVKLSISTLQVVVAPIVLGSYLQSAFPAAVRRNVIRLKSTMIDATLASDASFVLRIKSALSGDLGTIVLSV VLLHLAGFLVGYFSAAIGGFKERQRRAIAIEVGMQNSSLGVVLATAHFSSSMVALPPALSAVVMNIMGSSLGFIWKHMDPSSNDDDDDAGNQLVQGQEGS T

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10036583 [exp]	0	1
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10018245 [exp]	2.0	0.8768
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10036969 [exp]	5.7	0.8416
AT4G23490			Protein of unknown function (D...		Lus10028769 [exp]	6.0	0.8611
AT5G04420			Galactose oxidase/kelch repeat...		Lus10017457 [exp]	8.4	0.8425
AT4G35730			Regulator of Vps4 activity in ...		Lus10041836 [exp]	10.1	0.8802
AT4G31890			ARM repeat superfamily protein...		Lus10041017 [exp]	12.6	0.8605
AT5G41460			Protein of unknown function (D...		Lus10028768 [exp]	14.5	0.8338
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Lus10022095 [exp]	14.7	0.8214
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10041457 [exp]	24.4	0.8406
AT3G09950			unknown protein		Lus10038794 [exp]	27.2	0.7975

Compare expression of checked genes

Lus10036583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.