Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70700 56 / 8e-09 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT3G17860 56 / 1e-08 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G74950 53 / 5e-08 ZIM TIFY10B, JAZ2 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) AT5G20900 52 / 7e-08 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 12 (.1) AT1G19180 51 / 1e-07 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT1G48500 45 / 3e-05 ZIM TIFY6A, JAZ4 TIFY DOMAIN PROTEIN 6A, jasmonate-zim-domain protein 4 (.1.2.3) AT4G14720 44 / 7e-05 ZIM TIFY4B, PPD2 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) AT4G14713 44 / 7e-05 ZIM TIFY4A, PPD1 PEAPOD 1, TIFY domain/Divergent CCT motif family protein (.1.2) AT3G21175 44 / 9e-05 GATA GATA24, TIFY2B, ZML1 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035804 [exp] 246 / 7e-81 AT5G20900 62 / 3e-11 jasmonate-zim-domain protein 12 (.1) Lus10031333 [exp] 47 / 1e-05 AT3G17860 155 / 8e-44 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10013166 [exp] 46 / 1e-05 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10017991 [exp] 44 / 0.0002 AT3G17860 189 / 3e-56 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10031907 [exp] 43 / 0.0002 AT3G17910 378 / 5e-125 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1) Lus10041986 [exp] 42 / 0.0004 AT3G17860 174 / 4e-51 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G108200 [exp] 57 / 3e-09 AT3G17860 180 / 7e-54 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.018G047100 [exp] 56 / 6e-09 AT5G20900 122 / 6e-35 jasmonate-zim-domain protein 12 (.1) Potri.008G133400 [exp] 54 / 5e-08 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.006G217200 [exp] 52 / 1e-07 AT5G20900 126 / 3e-36 jasmonate-zim-domain protein 12 (.1) Potri.003G165000 [exp] 48 / 2e-06 AT5G13220 167 / 2e-52 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.015G035800 [exp] 47 / 1e-05 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.001G062500 [exp] 44 / 4e-05 AT5G13220 170 / 8e-54 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.012G044900 [exp] 44 / 9e-05 AT3G17860 235 / 2e-74 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.003G068900 [exp] 41 / 0.0006 AT1G72450 129 / 4e-36 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF09425 [flax] [poplar] Jas_motif Jas motif CL0281 [flax] [poplar] PF06200 [flax] [poplar] tify tify domain
Representative CDS sequence Show only first row Show all	>Lus10036584 pacid=23174536 polypeptide=Lus10036584 locus=Lus10036584.g ID=Lus10036584.BGIv1.0 annot-version=v1.0 ATGGAGATGTCGTCAAGTTTGAAGGAAAGAGGTGGAAGGATTAAGGAGGAATGGTTGGATGATGATGATGAAGGATGTCTGAAGTTATTCGGGGAGAAAG TATCATCATCGACCAGAAACGGCGATGATCATGGTGGTGATGATGATGGTGATAAACCCATTATTAATAATAGTAATAAGAACAAGGTCGTTGGTGGTGA GAAGAGTAGTAAGGTGGTGGAGATGAGAAGTTACAGTAGAGGGCTGAAGCAATTCTTGATGATGAACCACCGCCGACGACAAGCTTCCGTTCTAGAACGC CAGATTCTTCCTGGGATCATCAGTAGGAGTAGTAGTCCGGGAGGAAAGGTGGGTGTCGGCGATCAGTGTAGTAAAGCAATATCATCACAGCCACAACTGA CCATATTCTATTCCGGAATGGTTAACGTCTTCGACAACATTTCACCTGAAAAGGTCGAAGCCATGGTTTTGTTAGCTCGGGAGAGCTGCAAATCAAAGGG TAAACAATCAGAAGTAGTAGTTCATAATAATAATAATAATGAATCCACAAAGTTGAAGGATAAACCTCTTCCTTCTCCTGATGGATCCCGATTTAGACTT CCAGTTGCAAGGAAAATTTCACTGCAACATTTCATGGAGAAACGACGCTTTAGGATCACCAGCAAATCTCCCTATAATAATTACCCTCCTCCTCCTCCTC CTAATATTCCAAAACTAATTGGAGATGAAGAAGCAGAGGAAGAAGAAGATAAGAGTAAGAATGTTATGAATGGCGGCGGGTCAGATGATGATGATGATCC TATTATTTCACTTTCTCCATTTCCTTCTAGTTCAAGGTATTTCTTGTCGCTAACGCCGGCGGCCCCTGCTGCCGACGAAGATTGTCAAAACATGAGTTAA
AA sequence Show only first row Show all	>Lus10036584 pacid=23174536 polypeptide=Lus10036584 locus=Lus10036584.g ID=Lus10036584.BGIv1.0 annot-version=v1.0 MEMSSSLKERGGRIKEEWLDDDDEGCLKLFGEKVSSSTRNGDDHGGDDDGDKPIINNSNKNKVVGGEKSSKVVEMRSYSRGLKQFLMMNHRRRQASVLER QILPGIISRSSSPGGKVGVGDQCSKAISSQPQLTIFYSGMVNVFDNISPEKVEAMVLLARESCKSKGKQSEVVVHNNNNNESTKLKDKPLPSPDGSRFRL PVARKISLQHFMEKRRFRITSKSPYNNYPPPPPPNIPKLIGDEEAEEEEDKSKNVMNGGGSDDDDDPIISLSPFPSSSRYFLSLTPAAPAADEDCQNMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10036584 [exp]	0	1
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10018651 [exp]	16.5	0.7115
AT1G64650			Major facilitator superfamily ...		Lus10003219 [exp]	23.9	0.7021
AT3G62060			Pectinacetylesterase family pr...		Lus10009966 [exp]	25.9	0.6960
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10015549 [exp]	27.4	0.6797
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10020030 [exp]	27.6	0.6819
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10014853 [exp]	31.9	0.6932
AT5G65630		GTE7	global transcription factor gr...		Lus10010524 [exp]	33.2	0.6922
AT5G50110			S-adenosyl-L-methionine-depend...		Lus10034118 [exp]	46.8	0.6395
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10010097 [exp]	47.6	0.6563
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10018245 [exp]	50.6	0.6723

Compare expression of checked genes

Lus10036584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.