Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49960 1023 / 0 unknown protein AT5G02940 166 / 4e-42 Protein of unknown function (DUF1012) (.1) AT5G43745 161 / 2e-40 Protein of unknown function (DUF1012) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035805 [exp] 1647 / 0 AT5G49960 1146 / 0.0 unknown protein Lus10013455 [exp] 882 / 0 AT5G49960 936 / 0.0 unknown protein Lus10041014 [exp] 686 / 0 AT5G49960 749 / 0.0 unknown protein Lus10041011 [exp] 645 / 0 AT5G49960 605 / 0.0 unknown protein Lus10039407 [exp] 165 / 9e-42 AT5G43745 1019 / 0.0 Protein of unknown function (DUF1012) (.1) Lus10035800 [exp] 58 / 1e-09 AT5G48580 127 / 1e-38 FK506- and rapamycin-binding protein 15 kD-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G008800 [exp] 1266 / 0 AT5G49960 1142 / 0.0 unknown protein Potri.004G223400 [exp] 1218 / 0 AT5G49960 1134 / 0.0 unknown protein Potri.019G097000 [exp] 879 / 0 AT5G49960 907 / 0.0 unknown protein Potri.013G128100 [exp] 876 / 0 AT5G49960 927 / 0.0 unknown protein Potri.008G160700 [exp] 176 / 4e-45 AT5G43745 1008 / 0.0 Protein of unknown function (DUF1012) (.1) Potri.010G078600 [exp] 172 / 4e-44 AT5G43745 966 / 0.0 Protein of unknown function (DUF1012) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0582 [flax] [poplar] TrkA_C PF06241 [flax] [poplar] Castor_Poll_mid Castor and Pollux, part of voltage-gated ion channel
Representative CDS sequence Show only first row Show all	>Lus10036585 pacid=23174521 polypeptide=Lus10036585 locus=Lus10036585.g ID=Lus10036585.BGIv1.0 annot-version=v1.0 ATGGCTCAGAGCAACGATGATCCTGCTCCGGGCTCCAAGAAAGCGGAGGAGTGGCCGCCGCTTCTCAAGAAATCCAAGACTACTTCAATCTCCGATCAAA CTCATTTCCCCGGTCCACTCTTCCCCGCTGTTCGCCGCGCCTCTTCTATTCCAGCCGCAACTTCCTCCACTACTTCTCAGCTCCGCCCTCAGCTCCCGGA TCTTCGCGTCTCTGTCGGCAATAACTCCGATCCGCCTTCTACTTCAACAGCTTTGAGTAGTTTCAGTAGTAATAACATCAGCAATATTAGCAGCGGAAGC AATAGTATAGGAAGCTTTAATGGAAGCGCTTTTGCGGATCGGGACTGGATGTACCCTTCGTTTCTCGGCCCGCACGTGACCAGGAATCGCGTTACGGTCA AAGGCCGCCGTACAGCCGCCGCCGGAGTGCAGGCGACTACTTCGGTGGATAAGCTAGGGATTGAAACTCTTTCCGGCAGTGGATTGAGGGATGGAAGAGG ACAGAGTAACAGTACCAAATTGAAGGTAGCAAGTAAGGACGCTGCGGCGAGTCGAGCGCAGGCTAGTGCTCCGGCGACTCAGTCTGAAACGAGGAGGAGG GTTTTCGAGTCCAAGCATCCGTTGGTTTATTATTTGCTCCTTTTTACCTGTACATTCTCAATATCTTATTCAGTTCATCTGCGGAATGAACTCGGTAGGG TAGAGGCAGAGAATTTTAACCTTCGTAAAGTGTGTAGGGACAAAGATGTTGTTGGTAATGATGGCATCGAAGTTTTGCAGGCTGAAGATAGCTTGTTTTA TTTCGGGAATGCTGACAGTAGAACTCTTGCTTTGTATACTGTGATCGTCACTCTCCTTCTTCCATTTGCGTTCTACAAATGCCTTGATCGTCTTCCGCAA TTGAAGACCATCTTAAATAGAACAAAGAATAACAAGGAGGAGGTTCCTTTGAAGAAGAGAATTGCTTATAGGGTGGATGTTTGTTTTTCTATCTATCCCT ATGCAAAGCTGCTTGCCCTCCTATTCGCAACCATCTTCCTCATATGTTTTGGCGGGTTGGCATTATATGCGGTCAGTGATGGGAGCTTCACTGATGCTCT TTGGCTTTCGTGGACATTTGTTGCGGACTCAGGAAATCATGCTGATAGAGTCGGCACAGGGCCAAGGATAGTTTCTGTCTCTATAAGCTCCGGGGGAATG CTGATCTTTGCCATGATGCTTGGACTTGTGTCAGATGCTATTTCAGAGAAGGTGGATTCTCTTAGGAAAGGGAAAAGTGAAGTCATTGAAAAAGATCATA TATTAATTCTTGGATGGAGTGACAAGTTGAGCGATGCACGTGCGTTGAGGGTTGTGCTCAGCTTGACTGGAGTTAGAGAAGGGTTGAGGGGTCATGTTGT TGTAGAGATGAGTGACTTGGATAATGAACCTCTAGTGAAGCTTGTTGGTGGGGACTTGATTGAAACAGTTGTTGCTCATGATGTCATTGGTCGTTTGATG ATCCAATGTGCTTTGCAACCAGTGTCAAAGGCCCGTGCAATAATAGTGTTAGCATCTGATGAAAATGCAGATCAGAGCGATGCACGTGCGTTGAGGGTTG TGCTCAGCTTGACTGGAGTTAGAGAAGGGTTGAGGGGTCATGTTGTTGTAGAGATGAGTGACTTGGATAATGAACCTCTAGTGAAGCTTGTTGGTGGGGA CTTGATTGAAACAGTTGTTGCTCATGATGTCATCGGTCGTTTGATGATCCAATGTGCTTTGCAACCAGGTCTTGCACAGATTTGGGAAGATATATTGGGT TTTGAGAATGCAGAGTTTTACATCCAACGATGGCCCGAGCTTGATGGTATGTTGTTTGAAGATGTGCTCATCTCGTTTCCTGATGCAATTCCTTGTGGAG TTAAGGTTGCTGCAGAAGGTGGCAAGATAAACATAAATCCAGATGATAACTATGTTTTGCGAGAAGGTGATGAAATCCTAGTCATAGCTGAAGATGATGA CACGTATGCTCCAGGTCCTCTTCCAGAGGTGCGTAGAGGATTTTTCCCAAAGATACATGATCCTCCAAAATATCCTGAAAAGATTTTGTTCTGTGGTTGG CGCCGTGACATTGATGATATGATAATGGTTTTAGAGGCTTTCCTGGCTCCAGGTTCAGAATTGTGGATGTTTAATGAGGTTCATGAGAAAGAAAGAGAAA AGAAGCTTATTGATGGTGGGCTCGACATTTCCGGACTAGAAAACATAAAACTTGTTCACCGTGAGGGCAATGCTGTCATTAGAAGGCATTTGGAGAGTCT TCCACTAGAGACGTTTGATTCTGAACAGATATTAATTCTTGCAGACGAGTCATTAGAGGACTCCATTGTTCAGTCTGATTCAAGATCTCTTGCAACCCTG CTTCTGATCCGGGACATACAGTCGAAGAGGCTTCCATACAAAGACAAAAAGACGACATCTTTACGGCTTTCTGGGTTCTCTCACAGCTCCTGGATACGGG AAATGCAGCAAGCTTCTGACAAGTCCATAATCATCAGCGAAATCCTGGATTCCAGGACAAGGAACTTGGTGTCGGTTTCGAGAATCAGCGACTATGTGCT GTCGAATGAGCTGGTCAGTATGGCACTTGCAATGGTTGCTGAAGACAAGCAAATCAATCGCGTTCTAGAGGAACTGTTCGCAGAGGAGGGGAATGAGATG TGCATAAAGCCAGCAGAGTTCTACCTGTACGACCAAGAGGAGATATGCTTCTACGACATAATGCTGAGGGGGCGGCAGAGACAAGAGATTGTAATCGGAT ATCGGCTAGTGAACACGGAGCGTGCCATAATGAACCCTCAAGGCAAGTCGGCACTCAGGAAATGGTCCGTGGATGATGTCTTCGTCGTCATTTCATTGGG TGAATGA
AA sequence Show only first row Show all	>Lus10036585 pacid=23174521 polypeptide=Lus10036585 locus=Lus10036585.g ID=Lus10036585.BGIv1.0 annot-version=v1.0 MAQSNDDPAPGSKKAEEWPPLLKKSKTTSISDQTHFPGPLFPAVRRASSIPAATSSTTSQLRPQLPDLRVSVGNNSDPPSTSTALSSFSSNNISNISSGS NSIGSFNGSAFADRDWMYPSFLGPHVTRNRVTVKGRRTAAAGVQATTSVDKLGIETLSGSGLRDGRGQSNSTKLKVASKDAAASRAQASAPATQSETRRR VFESKHPLVYYLLLFTCTFSISYSVHLRNELGRVEAENFNLRKVCRDKDVVGNDGIEVLQAEDSLFYFGNADSRTLALYTVIVTLLLPFAFYKCLDRLPQ LKTILNRTKNNKEEVPLKKRIAYRVDVCFSIYPYAKLLALLFATIFLICFGGLALYAVSDGSFTDALWLSWTFVADSGNHADRVGTGPRIVSVSISSGGM LIFAMMLGLVSDAISEKVDSLRKGKSEVIEKDHILILGWSDKLSDARALRVVLSLTGVREGLRGHVVVEMSDLDNEPLVKLVGGDLIETVVAHDVIGRLM IQCALQPVSKARAIIVLASDENADQSDARALRVVLSLTGVREGLRGHVVVEMSDLDNEPLVKLVGGDLIETVVAHDVIGRLMIQCALQPGLAQIWEDILG FENAEFYIQRWPELDGMLFEDVLISFPDAIPCGVKVAAEGGKININPDDNYVLREGDEILVIAEDDDTYAPGPLPEVRRGFFPKIHDPPKYPEKILFCGW RRDIDDMIMVLEAFLAPGSELWMFNEVHEKEREKKLIDGGLDISGLENIKLVHREGNAVIRRHLESLPLETFDSEQILILADESLEDSIVQSDSRSLATL LLIRDIQSKRLPYKDKKTTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEM CIKPAEFYLYDQEEICFYDIMLRGRQRQEIVIGYRLVNTERAIMNPQGKSALRKWSVDDVFVVISLGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49960			unknown protein		Lus10036585 [exp]	0	1
AT2G02090		CHA19, ETL1, CH...	CHROMATIN REMODELING 19, SNF2 ...		Lus10039140 [exp]	4.7	0.8655
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	9.5	0.8802
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	14.0	0.8779
AT5G07130		LAC13	laccase 13 (.1)		Lus10042251 [exp]	15.9	0.8682
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10000490 [exp]	19.2	0.8766
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10039144 [exp]	19.4	0.8414
AT3G09410			Pectinacetylesterase family pr...		Lus10025347 [exp]	21.2	0.8029
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	21.8	0.8759
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10038260 [exp]	22.4	0.8766
AT5G15680			ARM repeat superfamily protein...		Lus10019255 [exp]	23.5	0.7756

Compare expression of checked genes

Lus10036585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.