Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19520 437 / 1e-143 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT3G14810 432 / 7e-140 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT1G78610 429 / 4e-139 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT1G53470 422 / 6e-136 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT2G17000 417 / 2e-134 Mechanosensitive ion channel family protein (.1) AT5G12080 351 / 2e-110 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT2G17010 293 / 6e-88 Mechanosensitive ion channel family protein (.1) AT1G49260 45 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036587 [exp] 822 / 0 AT5G12080 549 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10029701 [exp] 600 / 0 AT5G12080 523 / 9e-177 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10002960 [exp] 500 / 3e-170 AT5G12080 605 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10006347 [exp] 506 / 2e-169 AT5G12080 659 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10016423 [exp] 471 / 1e-156 AT5G12080 786 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10019694 [exp] 468 / 3e-155 AT5G12080 778 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10027617 [exp] 471 / 4e-154 AT5G12080 839 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10042499 [exp] 443 / 8e-144 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10038148 [exp] 439 / 4e-142 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073000 [exp] 743 / 0 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 716 / 0 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G144100 [exp] 537 / 0 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G222500 [exp] 508 / 2e-170 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.004G178900 [exp] 429 / 3e-138 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 401 / 1e-128 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.011G105500 [exp] 304 / 4e-91 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.001G384100 [exp] 303 / 5e-91 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Lus10036586 pacid=23174416 polypeptide=Lus10036586 locus=Lus10036586.g ID=Lus10036586.BGIv1.0 annot-version=v1.0 ATGTCAGAGCAAATGGTTCTCATCACCATCGATGATAACCACCGCCAAAGTACTGATCGTCATCACAAATCCAAACATTCGCCGCCACTGTCGCCGTCAA GGCCAAACAACGTCAAAACGCTCCACCGTCTCAACTTCTCCAAACCAAAGTCCCGTTTCTCCGAACCAACTACTACTACTCCCAACGGCACTGCTACTAA TTATCCACTACCCCCCTCCAACCACAGTTACCAATCCGAATCCGACGACCAATATTCCGATTCCGATTCCGATTTCGACGAAGACGACAGTAAACGGCAT GGTTCCAGTAAATCAAAAACCAAGGGTGGATTTCGATGCAACATACCATTCAAATTCAAAGTAACGAGAAGGGCGTGGATCGAATTCGCTTTCTTCCTCC TCCTCACTGCTTTCCTAATCTGCTCCCTGACCCTAAACCCGGTCAAGAACCGGTTCAAATGGGGAATCCAGATCTGGAAATGGTGCCTAATGGTCTTGGT CTTATTCTCCGGCCGCCTCGTCGCCGGATGGGCCGTCGGGTTTTTAGTTTTCTTAATCGAGCGCAATTTCATACTCAAGGAGAAGGTGGTCTACTTTGTC TACGGCCTCCGGCGAAGCTTCCAGAACTGCGTCTGGCTCGCCATCGCGCTTCTCTCGTGGACCGTGATGTTCAACGACGGCGAATCCAAAAATGCCGCCA TTCTCAAGAAGCTCTTCCGCGGCCTCGTCGCTGTCCTGATCGGCGCCACTCTATGGCTCGTCAAGATCCTCCTGGTTAAGGTCCTGGCGTCGTCGTTCCA CGTGGCGACATACTTCGATCGGATGAAGGAGAGCGTCTTCCACCACTACATCCTGGAATCCCTCTCCGGGCCGCCGTTGGAAGTGGTGGATGAGGGCGGC TCTGAAGGTGGCCGCCTGCGATTGAGGCGGCGGGGGTGGTCGTTGAGGTTGTCGAAATCGATGCCGACGGAAATTAAGGACATGAGGCCGGCGGCGGCAG AGAAATCCAGTGCGGCGTCCATTGCGAGGTCGAGGACGTTGGGCGGCGGCGGAGGTGGGGGGAGGAGGATTGATATGGAGAGGCTGAAGAAGCTGAGTAT GGATAGTAGAGCTAGCGCGTGGAGCGTGAAGAGGCTGGTTAAGTATGTGAAGTCGTCGGGACTTTCTACGATTTCAACGGCGGTGGATGGCTTTGGGCGG TCGGAAATTCATAGTGAGATGGAGGCCAGAACTTGTGCTCGCCGGATCTTCCGCCATGTTGCTAAGCCCGGTGCCAAGCAAATTGACGAGGAAGACCTAC TGAAGTTTTTAACAAAAGATGAGGTTAACACTATGTTTCCACTCTTCGAAGGAGCCGTTGAGACGGAGAAAATTACAAAATCTTCCTTCAGAAATTGGAT GGTATATGCATATGTTGAGAGAAAAGCATTGGCACATTCCTTAAACGACACAAAAACGGCAGTGCACCAGCTTCACAAGTTGGCGAGTGCAATAGCAATA GTGATCATAGTGGTGATGTCACTGCTAGTAATGGGCCTGGCCACAACCAAAGTGTTACTAGTGGTCACATCTCAACTTCTTCTTGTTGGGTTCATGTTCC AAAACACTTGCAAAACCATGTTCGAGTCCATCATTTTCGTCTTCGTCATGCACCCTTTCGATGTCGGGGACCGTTGTGTCATTGATGGCATCCAGATGAT TGTGGAGGAGATGAACATACTGACAACAGTGTTCTTGAGGTATGACATGGAGAAGATATACTACCCGAACTCTGTCCTTATTTCGAAACCAATCAGCAAC TTCAGGAGAAGTCCAGACATGGGCGACTCTCTTGATTTCACCATCGATGTCTCCACTTCAGTCGATGATTTCAACGCCCTCAAGAAAGCCATTCAAAAAT ACATCGAGAGCAAGCCGAAATATTGGAGCCCAAAGCATTCAGTTGTGGTGAAAGAGATCGAGAACGTGGACAAGATGAAGTTGAGTCTGTGTGTTCAACA TACAATGAACCACCAAAACTATGGAGAGAAGAGCATGAGGAAATCAGAGCTTGTGTTTGAGCTCAAAAACATGTTTCAAAACCTAGGTATTAGATATCAT CTCCTTCCTCAACAAGTACATCTCACCCAGTTTCTGGATGCTGCTACTGCAAGCTAA
AA sequence Show only first row Show all	>Lus10036586 pacid=23174416 polypeptide=Lus10036586 locus=Lus10036586.g ID=Lus10036586.BGIv1.0 annot-version=v1.0 MSEQMVLITIDDNHRQSTDRHHKSKHSPPLSPSRPNNVKTLHRLNFSKPKSRFSEPTTTTPNGTATNYPLPPSNHSYQSESDDQYSDSDSDFDEDDSKRH GSSKSKTKGGFRCNIPFKFKVTRRAWIEFAFFLLLTAFLICSLTLNPVKNRFKWGIQIWKWCLMVLVLFSGRLVAGWAVGFLVFLIERNFILKEKVVYFV YGLRRSFQNCVWLAIALLSWTVMFNDGESKNAAILKKLFRGLVAVLIGATLWLVKILLVKVLASSFHVATYFDRMKESVFHHYILESLSGPPLEVVDEGG SEGGRLRLRRRGWSLRLSKSMPTEIKDMRPAAAEKSSAASIARSRTLGGGGGGGRRIDMERLKKLSMDSRASAWSVKRLVKYVKSSGLSTISTAVDGFGR SEIHSEMEARTCARRIFRHVAKPGAKQIDEEDLLKFLTKDEVNTMFPLFEGAVETEKITKSSFRNWMVYAYVERKALAHSLNDTKTAVHQLHKLASAIAI VIIVVMSLLVMGLATTKVLLVVTSQLLLVGFMFQNTCKTMFESIIFVFVMHPFDVGDRCVIDGIQMIVEEMNILTTVFLRYDMEKIYYPNSVLISKPISN FRRSPDMGDSLDFTIDVSTSVDDFNALKKAIQKYIESKPKYWSPKHSVVVKEIENVDKMKLSLCVQHTMNHQNYGEKSMRKSELVFELKNMFQNLGIRYH LLPQQVHLTQFLDAATAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10036586 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10003571 [exp]	1.4	0.9327
AT5G01890			Leucine-rich receptor-like pro...		Lus10014174 [exp]	1.4	0.9402
AT1G35710			Protein kinase family protein ...		Lus10003612 [exp]	3.0	0.9293
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10024016 [exp]	4.9	0.8993
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10007671 [exp]	6.7	0.9129
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10010647 [exp]	7.0	0.9066
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10013968 [exp]	8.7	0.8938
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011426 [exp]	9.9	0.9004
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10027476 [exp]	10.0	0.9021
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10002037 [exp]	10.2	0.9157

Compare expression of checked genes

Lus10036586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.