Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12080 473 / 1e-157 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 437 / 1e-143 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT1G78610 431 / 6e-140 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT2G17000 431 / 6e-140 Mechanosensitive ion channel family protein (.1) AT1G53470 421 / 5e-136 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT3G14810 419 / 5e-135 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT2G17010 294 / 7e-89 Mechanosensitive ion channel family protein (.1) AT1G49260 49 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036586 [exp] 816 / 0 AT5G12080 573 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10029701 [exp] 578 / 0 AT5G12080 523 / 9e-177 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10002960 [exp] 515 / 1e-176 AT5G12080 605 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10006347 [exp] 513 / 2e-172 AT5G12080 659 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10016423 [exp] 486 / 1e-162 AT5G12080 786 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10019694 [exp] 482 / 4e-161 AT5G12080 778 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10027617 [exp] 484 / 2e-159 AT5G12080 839 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10042499 [exp] 446 / 3e-145 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10038148 [exp] 443 / 3e-144 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073000 [exp] 731 / 0 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 704 / 0 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G144100 [exp] 539 / 0 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G222500 [exp] 517 / 4e-174 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.011G105500 [exp] 432 / 1e-139 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.001G384100 [exp] 430 / 5e-139 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.004G178900 [exp] 424 / 9e-137 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 385 / 1e-122 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Lus10036587 pacid=23174427 polypeptide=Lus10036587 locus=Lus10036587.g ID=Lus10036587.BGIv1.0 annot-version=v1.0 ATGAGCGACGACTCCTCCCCGTTTCCCACCTTCACGGTGGCAGAGCAAGTCATTCTCACCGTCAACGACGACGGCAGCCAACTACCTCATTACCATCACA ATTCCCAACAACAACCTCCGCCATCATCATCATCATCATCATCATCATCATCAATACCAAACATTAATAACAACACCGGCCTACTCCGCCGCCTTTCCAA ACCCAAGTCCCGCTTCTCCGACCAACCCAACACCAATAATAATAATTACTGCAAACCCCAACCCCATCATCATCCTTCCGACTCCGACTCCGAAGACTCT GACTCCGACTTCGAACACAACGACGACCACCACCACCACCCCAAACAAACCTTATTCCCAAACACACCCAAAATCTTCAAAGTCACCAATAGGGCATGGT TAGAGTTCACTTCCTTCCTAATCCTCACAACTTTCCTCATCTCCTCCCTAACCCTTAGCCCACTCAAGAACCAGTCCAAATGGGGACTCCACATCTGGAA ATGGTGCCTCATGGTCCTCGTCCTCTTCTCCGGCCGCCTCGTCTCCGGATGGGCCGTCGGGTTCCTAGTTTTCATAATCGAGCGCAACTTCATACTCAAG GAGAAAGTAGTCTACTTCGTCTACGGCCTCCGCCGAAGCTTCCAGAACTGCGTCTGGCTAGCCCTCGCCTTACTCTCATGGACCGTCATGTTCCACGACG AACAATCCCGAAACGCCGTCATTTTGAAGAAGCTCTTCCGCTGCCTCGTCGCCGTGCTCATCGGCGCCACGCTCTGGCTGGTCAAGATCCTCCTGGTCAA GGTCCTGGCGTCGTCGTTCCACGTGACGACCTACTTTGACCGGATGAAGGAGAGTGTGTTCCACCACTACATCCTCGACGCCCTCTCCGGACCGCCATGC GAGACGAGCACGGATGTTCCGCGGAAGCAGAGGAAGATGATCAGTGGCGGCGGTGGTGGGCCGAGGAGGATTGATATGGAGAGGCTGAAGAAGCTGAGCA TGGAGAGGAGGGGGAGCGCGTGGAGCGTGAAGAGGCTTGTTAAGTATATAAAGTCGTCGGGGCTATCGACGATTTCGACGGCCGTGGATGGTGTCAGGCA GTCGGAGATTCATAGCGAGGTGGAAGCGAGGAGTTGTGCTCAACGGATCTTCCGCCATGTCGCCAAGCCTGCTGCCAAGTATATTGAAGAGGAAGATCTA TTGAGGTTCTTGACGGTTGACGAGGTCAACACCATATTTCCATTCTTCGAAGGAGCTAATTACGAGACTGGCAGAATCACTAAATCCTCTTTCAGAAACT GGTTGGTACATGCCTATGTGGAGAGAAAAGCACTGGCTTATTCCTTGAACGACACCAAAACCGCAGTGAACCAGCTCCACAAGTTGGCGAGTGCGATAGC CATCGTGATCATGGCCGTGGTCTCGCTTCTTGTAATGGGTCTGGCCACAATCAAAGTCTTGCTTGTGGTCACGTCTCAGCTTCTCCTTGTCGGGTTCATG TTCCAGAACACATGCAAGACCATATTCGAATCCATCATCTTCGTCTTCGTCATGCACCCCTTTGATGTTGGGGACCGTTGCGTTATCGACAACATACACA TGATTGTTGAGGAGATGAACATATTGACGACAGTGTTCTTGAGGTATGACATGGAGAAGATATACTACCCGAACTCAGTCCTCATTTCCAAGCCGATCAG CAACTTCAGGAGGAGCCCGGACATGGGCGATTCGGTTGAGTTCACCATCGATGTCTCCACTTCCCTCGATGATTTCAACGCCCTCAAGAAAGCCATTCAA ATGTACATTGAGAGCAAGCCAAAGTACTGGAGTCCAAAGCATGCAGTATTGGTGAAGGAGATTGAGAATGTGGATAAGATGAAGGTAGTTCTGGGTGTAC AACACACTATGAACCATCAAAACTATGGAGAAAAGAGCAGCAGAAGATCGGAACTCGTATTCGAGCTCAAAAGAATATTCGAGAACCTGGGTATCAAATA CCATCTGCTTCCCCAACTAGTTCATCTCGCCCAATTCAATACTAGTACCAACAATAATTCAAGGTTCAGCGCCGCCGTGTAG
AA sequence Show only first row Show all	>Lus10036587 pacid=23174427 polypeptide=Lus10036587 locus=Lus10036587.g ID=Lus10036587.BGIv1.0 annot-version=v1.0 MSDDSSPFPTFTVAEQVILTVNDDGSQLPHYHHNSQQQPPPSSSSSSSSSSIPNINNNTGLLRRLSKPKSRFSDQPNTNNNNYCKPQPHHHPSDSDSEDS DSDFEHNDDHHHHPKQTLFPNTPKIFKVTNRAWLEFTSFLILTTFLISSLTLSPLKNQSKWGLHIWKWCLMVLVLFSGRLVSGWAVGFLVFIIERNFILK EKVVYFVYGLRRSFQNCVWLALALLSWTVMFHDEQSRNAVILKKLFRCLVAVLIGATLWLVKILLVKVLASSFHVTTYFDRMKESVFHHYILDALSGPPC ETSTDVPRKQRKMISGGGGGPRRIDMERLKKLSMERRGSAWSVKRLVKYIKSSGLSTISTAVDGVRQSEIHSEVEARSCAQRIFRHVAKPAAKYIEEEDL LRFLTVDEVNTIFPFFEGANYETGRITKSSFRNWLVHAYVERKALAYSLNDTKTAVNQLHKLASAIAIVIMAVVSLLVMGLATIKVLLVVTSQLLLVGFM FQNTCKTIFESIIFVFVMHPFDVGDRCVIDNIHMIVEEMNILTTVFLRYDMEKIYYPNSVLISKPISNFRRSPDMGDSVEFTIDVSTSLDDFNALKKAIQ MYIESKPKYWSPKHAVLVKEIENVDKMKVVLGVQHTMNHQNYGEKSSRRSELVFELKRIFENLGIKYHLLPQLVHLAQFNTSTNNNSRFSAAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10036587 [exp]	0	1
AT1G51405			myosin-related (.1)		Lus10009954 [exp]	31.3	0.7561
AT5G52280			Myosin heavy chain-related pro...		Lus10029303 [exp]	45.9	0.7340
AT2G45910			U-box domain-containing protei...		Lus10036359 [exp]	47.1	0.7547
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10000021 [exp]	50.3	0.7625
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Lus10012895 [exp]	94.2	0.7208
AT1G17100			SOUL heme-binding family prote...		Lus10029117 [exp]	136.2	0.7104
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Lus10016363 [exp]	154.6	0.7158
AT3G18150			RNI-like superfamily protein (...		Lus10042331 [exp]	168.1	0.6931

Compare expression of checked genes

Lus10036587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.