Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20020 245 / 2e-77 unknown protein AT5G44780 167 / 7e-46 unknown protein AT1G11430 143 / 2e-40 plastid developmental protein DAG, putative (.1) AT3G06790 120 / 2e-31 plastid developmental protein DAG, putative (.1.2) AT2G33430 104 / 6e-26 DAL1, DAL differentiation and greening-like 1 (.1) AT1G32580 102 / 4e-25 plastid developmental protein DAG, putative (.1) AT2G35240 98 / 1e-23 plastid developmental protein DAG, putative (.1) AT3G15000 98 / 2e-22 cobalt ion binding (.1) AT1G72530 72 / 1e-14 plastid developmental protein DAG, putative (.1.2) AT1G53260 56 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035806 [exp] 462 / 2e-162 AT4G20020 278 / 4e-90 unknown protein Lus10037713 [exp] 362 / 1e-123 AT4G20020 261 / 9e-84 unknown protein Lus10018398 [exp] 145 / 8e-42 AT1G11430 309 / 2e-108 plastid developmental protein DAG, putative (.1) Lus10007615 [exp] 145 / 3e-41 AT1G11430 314 / 2e-109 plastid developmental protein DAG, putative (.1) Lus10016825 [exp] 133 / 4e-36 AT3G06790 286 / 1e-97 plastid developmental protein DAG, putative (.1.2) Lus10011789 [exp] 99 / 8e-24 AT1G32580 341 / 5e-120 plastid developmental protein DAG, putative (.1) Lus10023744 [exp] 99 / 1e-23 AT1G32580 342 / 2e-120 plastid developmental protein DAG, putative (.1) Lus10043130 [exp] 100 / 5e-23 AT3G15000 284 / 6e-92 cobalt ion binding (.1) Lus10014696 [exp] 99 / 8e-23 AT3G15000 291 / 1e-95 cobalt ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G015100 [exp] 258 / 6e-82 AT4G20020 239 / 2e-74 unknown protein Potri.004G218650 [exp] 206 / 4e-60 AT4G20020 187 / 5e-53 unknown protein Potri.004G218800 [exp] 189 / 2e-53 AT4G20020 182 / 8e-51 unknown protein Potri.011G032900 [exp] 144 / 5e-41 AT1G11430 261 / 1e-88 plastid developmental protein DAG, putative (.1) Potri.010G007200 [exp] 141 / 2e-39 AT3G06790 269 / 6e-91 plastid developmental protein DAG, putative (.1.2) Potri.008G169900 [exp] 100 / 2e-24 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.010G068300 [exp] 100 / 3e-24 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.011G112200 [exp] 97 / 3e-22 AT3G15000 245 / 2e-77 cobalt ion binding (.1) Potri.001G393400 [exp] 97 / 6e-22 AT3G15000 263 / 2e-84 cobalt ion binding (.1) Potri.008G022200 [exp] 53 / 2e-07 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036589 pacid=23174636 polypeptide=Lus10036589 locus=Lus10036589.g ID=Lus10036589.BGIv1.0 annot-version=v1.0 ATGGCCCTCCAATTCCTTCGTCTCCGGCGAGCTGTAACCTCTCTCTCAGCCGCCCACCGCTCTCTCTCCTCCTCAATCATTCCCCTCCCATCGCAACTCA CTCCTCGTACGGTCCCCGACGCTTCCCACGTTTCTTCGTCTCCAAAGTTCTCCTTCTCGCAATCTCGCGGGTTCACTGGCTCAAGGGTATCGCTGGCGGA GGAAAGGAGGTATAAGCTGTACAAGGAAGGAGACGAGATCACGGAGGACACCGTACTCTTCGAAGGCTGTGATTTTAATCACTGGCTGATCACCGTTGAT TTCCCCAAGGACCCGGCGCCTTCGGCTGAGGAGATGGTCGCCACTTATGAGAGAATCTGTGCTCAAGGACTCGGTATCAGCATCGAAGAGGCCAAGCAAA AGATGTATGCGTGTAGCACAACTACTTATCAGGGGTTTCAAGCTATAATGACCGAGACAGAATCTGAGAAATTTAAAGATGTACCCGGAGTTGTTTTCGT GTTACCAGATTCCTACATTGATCCCGTAAACAAAGAGTATGGAGGAGACAAGTATGAAAACGGAGTGATTACGCACAGGCCTCCACCAGTACAGTATCGG AGGAACGACAGATCACGCCAGCAGGGAAGTAGAAGATACGGCCAACAGGAGTATCAGCAACAAGGGGCTCCCCAATATAATCAACCGAGGAATCCTCAAT ATAACCAGCTGGGTAACCCTGACTTCCGGCAACAAGGTTATAATCAACATCAGCAGCAGCAAGGACCAATGCAAGGGGATGATAGGAATAATGGTCCTCC CCAGACTTTCCAGTCTCAACAACAGTTTGGTGCACCTCCTCCGCAGAATTATCCTCAACAAAATAATTATGGTGCTCCTCAGCGGAATTTTGGTGGTCCG CAAAATAATTATGGTGCTCCTCAACAGAATAATGGTGCTCCTCCGAACAATTATGGTACTCCACAACAAAACTATCCTCCTAGGGATAGCCAGGGACAGC AGGGAAATTACTATCGTCCAGCTCAAGGTGGCTCCTTGGGAGGAGACCAGAAAAACTATGGACCCCCTGGGCAGAGGGATCCTAGGGGAGATGGTGGAAG CTACGGGCAAGGTGCAAATCATGGCAGTGGACATGGTTATCCCGGTGAAGGTCAAGGATTTTCACAAATGGGTTAG
AA sequence Show only first row Show all	>Lus10036589 pacid=23174636 polypeptide=Lus10036589 locus=Lus10036589.g ID=Lus10036589.BGIv1.0 annot-version=v1.0 MALQFLRLRRAVTSLSAAHRSLSSSIIPLPSQLTPRTVPDASHVSSSPKFSFSQSRGFTGSRVSLAEERRYKLYKEGDEITEDTVLFEGCDFNHWLITVD FPKDPAPSAEEMVATYERICAQGLGISIEEAKQKMYACSTTTYQGFQAIMTETESEKFKDVPGVVFVLPDSYIDPVNKEYGGDKYENGVITHRPPPVQYR RNDRSRQQGSRRYGQQEYQQQGAPQYNQPRNPQYNQLGNPDFRQQGYNQHQQQQGPMQGDDRNNGPPQTFQSQQQFGAPPPQNYPQQNNYGAPQRNFGGP QNNYGAPQQNNGAPPNNYGTPQQNYPPRDSQGQQGNYYRPAQGGSLGGDQKNYGPPGQRDPRGDGGSYGQGANHGSGHGYPGEGQGFSQMG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20020			unknown protein		Lus10036589 [exp]	0	1
AT4G20020			unknown protein		Lus10035806 [exp]	2.4	0.9119
AT3G57490			Ribosomal protein S5 family pr...		Lus10009952 [exp]	3.5	0.9306
AT3G11250			Ribosomal protein L10 family p...		Lus10009887 [exp]	4.7	0.9226
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10024632 [exp]	5.5	0.9001
AT5G09500			Ribosomal protein S19 family p...		Lus10024865 [exp]	9.2	0.9026
AT3G15000			cobalt ion binding (.1)		Lus10032618 [exp]	10.8	0.8887
AT3G49080			Ribosomal protein S5 domain 2-...		Lus10014970 [exp]	11.2	0.8798
AT3G11250			Ribosomal protein L10 family p...		Lus10014841 [exp]	13.0	0.8964
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10020429 [exp]	14.3	0.8847
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10029824 [exp]	15.5	0.8882

Compare expression of checked genes

Lus10036589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.