Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49950 623 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT1G34340 539 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G50790 192 / 1e-55 esterase/lipase/thioesterase family protein (.1) AT2G03140 108 / 2e-24 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035744 [exp] 841 / 0 AT5G49950 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037322 [exp] 837 / 0 AT5G49950 632 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037325 [exp] 835 / 0 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035739 [exp] 831 / 0 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035807 [exp] 439 / 5e-152 AT5G49950 283 / 6e-92 alpha/beta-Hydrolases superfamily protein (.1) Lus10035741 [exp] 217 / 2e-67 AT5G49950 144 / 2e-40 alpha/beta-Hydrolases superfamily protein (.1) Lus10001673 [exp] 197 / 3e-57 AT3G50790 536 / 0.0 esterase/lipase/thioesterase family protein (.1) Lus10017332 [exp] 165 / 2e-45 AT3G50790 431 / 9e-150 esterase/lipase/thioesterase family protein (.1) Lus10034894 [exp] 109 / 1e-24 AT2G03140 697 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223100 [exp] 622 / 0 AT5G49950 648 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G115000 [exp] 514 / 8e-179 AT1G34340 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G146500 [exp] 203 / 2e-59 AT3G50790 512 / 0.0 esterase/lipase/thioesterase family protein (.1) Potri.006G136900 [exp] 102 / 1e-22 AT2G03140 1356 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10036590 pacid=23174554 polypeptide=Lus10036590 locus=Lus10036590.g ID=Lus10036590.BGIv1.0 annot-version=v1.0 ATGGCTGAATCTGTTTCAGGTTCTCCCTACGATCTTCTCTTCAAAACTCTGTCTCTAATCCCTCCCGTTCACTACGCCGCTTTCCTCCTATCTCTTCTTC TCCTCTTCCTCTACCATTTCCTGGAGATCCATTTCCTCCGCGATTTCTTGACTGGCTTCAGAGGGAACCCGGTCAATCTCACTTACAATGCTTCGTCAGA GCTCTGCCGCGCCATTGTTTCCAACTGCAAAGTCATCCGCGGCAGGTATATGCCAACTCTATGGCTTTGTAGTCCTCACCTCCAAACAGCATTCTTGACT TTCTTCGGGAATTCTCCTCCTTTCACCTATACAAGGGTGCTATTCTATACAAGTGATGGGGGAACAATTGCTTTGGACTGGTTGTTGCACTCTCATGTTA ATGGTGATGCTGCTGAAAAATTGAATGAAACGGTTCTGCAGAAAACTGACAAAGCTCCTATCTTGATAGTTATTCCTGGCTTAACAAGCGACTCTGAGGC TCCTTACACAAAGCACCTTGTTTTCAAGATGGCAAAACAGGGTTGGAATGTTGTGGTAATCAATCACCGTGGATTAGGAGGTGTACAGATAACTTCTGAC TGCTTTTATACTGCCGGCGGGACAGAAGACTCGAGGAGTATCATTGAGCATATCCATCATGAATATCCAGATGCTCCTCTTTATGTGGTTGGGACCAGTA TCGGTGCCAATATCCTGGTGAAGTATCTAGGGGAGGACTCAGTTAATGTTCCCATCTTAGGCGCTGTTGCTGTGTGTTCTCCATGGGATCTGATGATATT TGATAGGTTTATTAACCGAAAATTTGTGCAAAAACTTTATGACAAGGCACTCGGGATTGGACTCGTAGGTTATGCTAAACTGCATCAGACTGTCGCATCT CGGCTTACAGACTGGGATAGCATTGTCAAGGCACGCTCTATCCGGGACTTCGATAACTATTTTACTTGTGTTATTGAGAAATTTGAGACAGTGGACACAT ATTACAGACGTTCAAGCTCTGTTAACTTCGTGGGAAAAGTAGCAGTGCCCCTTCTTTGCATCAGTGCTTTAGATGACCCTGTTTGTACTAGGGAATCTAT TCCATGGGAGGAATGCAGGATGAATCCAAATATTGTGTTGGCTGCAACAGAACATGGAGGCCACCTAGCTTATTATGAAGGAATTACCGCCAGTAGCATG TGGTGGGTGAGAGCTGCTAGTGAATTCCTCGAGGTGTTGCGGTCTAGCCCGTTAAAGGACAGGGCAAAAAGGGTGGAATCGAAAATCGACCAGGGGCCCT TCATCGACATAGAAGATGATGGAACTGTAGCAGCAGATGACAGTAGCAACGTGGACCATACTGGCAAGGAGGACAGTGAGGAAGAAGAAAGCAGCAAGGA TGTGGCAACATCCAAGAAACTGGATCCTGGAAATAATCCTTCTGATAAAAAGCTCAGCGATCTGATTGATCCCATGAAGAGACAAGTAACTAAGCTCAGA CGGCAGAGCAGAGTATCCATCTGGCTGCTTGCTTACATGGCCATCGTAACAACTTGGCCCTTGTTGGGTTCTGGCCTTCTTTTCCACCTCAAGAAAAAAT GGCGTAGAACTTCAGGCGACCAGCTGTGTCTTGCAGATATCATTAAGGCTGTTGGCTGA
AA sequence Show only first row Show all	>Lus10036590 pacid=23174554 polypeptide=Lus10036590 locus=Lus10036590.g ID=Lus10036590.BGIv1.0 annot-version=v1.0 MAESVSGSPYDLLFKTLSLIPPVHYAAFLLSLLLLFLYHFLEIHFLRDFLTGFRGNPVNLTYNASSELCRAIVSNCKVIRGRYMPTLWLCSPHLQTAFLT FFGNSPPFTYTRVLFYTSDGGTIALDWLLHSHVNGDAAEKLNETVLQKTDKAPILIVIPGLTSDSEAPYTKHLVFKMAKQGWNVVVINHRGLGGVQITSD CFYTAGGTEDSRSIIEHIHHEYPDAPLYVVGTSIGANILVKYLGEDSVNVPILGAVAVCSPWDLMIFDRFINRKFVQKLYDKALGIGLVGYAKLHQTVAS RLTDWDSIVKARSIRDFDNYFTCVIEKFETVDTYYRRSSSVNFVGKVAVPLLCISALDDPVCTRESIPWEECRMNPNIVLAATEHGGHLAYYEGITASSM WWVRAASEFLEVLRSSPLKDRAKRVESKIDQGPFIDIEDDGTVAADDSSNVDHTGKEDSEEEESSKDVATSKKLDPGNNPSDKKLSDLIDPMKRQVTKLR RQSRVSIWLLAYMAIVTTWPLLGSGLLFHLKKKWRRTSGDQLCLADIIKAVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10036590 [exp]	0	1
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	3.9	0.9167
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002601 [exp]	4.0	0.8337
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	5.5	0.9167
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	6.7	0.9167
					Lus10004437 [exp]	7.7	0.9167
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	8.7	0.9167
					Lus10021739 [exp]	9.5	0.9167
					Lus10039674 [exp]	10.2	0.9167
AT2G26490			Transducin/WD40 repeat-like su...		Lus10032868 [exp]	11.0	0.9167
					Lus10034553 [exp]	11.5	0.8981

Compare expression of checked genes

Lus10036590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.