Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57910 114 / 3e-31 unknown protein AT4G30630 98 / 1e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035808 [exp] 454 / 4e-164 AT5G57910 116 / 6e-32 unknown protein Lus10036255 [exp] 214 / 4e-69 AT5G57910 105 / 2e-27 unknown protein Lus10022161 [exp] 213 / 8e-69 AT5G57910 110 / 3e-29 unknown protein Lus10026889 [exp] 44 / 1e-05 AT4G30630 47 / 8e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G183000 [exp] 230 / 1e-75 AT4G30630 105 / 2e-27 unknown protein Potri.018G105300 [exp] 173 / 6e-54 AT5G57910 102 / 8e-27 unknown protein Potri.006G264900 [exp] 44 / 2e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036591 pacid=23174421 polypeptide=Lus10036591 locus=Lus10036591.g ID=Lus10036591.BGIv1.0 annot-version=v1.0 ATGAAACGGGTTGCTGTTACTGCTTCTGCTGCTGGGTATGAGGATCCAAGGATCAGATTCAAGCATGAGAGTCTTATGCAGGATTATGATGAACTGCTTA AGGAAACAGAAGACAAAAGGAAGAGGTTGGAGCTGATGAAACAGAAGAAACTGACTCTAATGGCTGAAGTGAGTTTCTTAAGGCGTCGGTTCAAGCAGTT GACTGAAATCCAGGTTCACCAAGACTTGCAATCACAGAACACATTAATGAAGGGTAAGAAAGTGAGGAACAAGGGAGTGAACTCCAGCGGCCCTGAGACT CCAGCATTGAAGCGGGCAGCTCCGAAGAAGTTTGATTTGAATCGGAAGGGAAAGGTGTATAGTGGGAAGGAATCTATTTGCCAAATTGACCTTAATCAGA AGCAGAAATCTCATTTCGGGAGAGAAGCTGCTGCTTTGAGGAATTCAGGGTTGATTCCTGACCTTAATGAGAAGGAAAAGATGTTTGTTGGAAAGGAGAG GAACAATGCACCAATTTTCGACTTGAACGAAATATCGAGGGAAGAGGAAGAAGTGCAGACAAACGACGAAATGATGATGATGACGACGACTAGGATGGAG GATCCGAAGATCACAAGTTCATTGCGAGGCGGGATTGATGAACAACACAACGATGTGAACTTATCGGCTTGTAGGAATGTCGGTAACGTGCCCAGCCGAG CAGTAGGGAAGAGAAAGATATCGTGGCAGGATCCAGTAGCCTTAAGGGTGTAA
AA sequence Show only first row Show all	>Lus10036591 pacid=23174421 polypeptide=Lus10036591 locus=Lus10036591.g ID=Lus10036591.BGIv1.0 annot-version=v1.0 MKRVAVTASAAGYEDPRIRFKHESLMQDYDELLKETEDKRKRLELMKQKKLTLMAEVSFLRRRFKQLTEIQVHQDLQSQNTLMKGKKVRNKGVNSSGPET PALKRAAPKKFDLNRKGKVYSGKESICQIDLNQKQKSHFGREAAALRNSGLIPDLNEKEKMFVGKERNNAPIFDLNEISREEEEVQTNDEMMMMTTTRME DPKITSSLRGGIDEQHNDVNLSACRNVGNVPSRAVGKRKISWQDPVALRV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57910			unknown protein		Lus10036591 [exp]	0	1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012870 [exp]	3.3	0.8734
AT5G57910			unknown protein		Lus10035808 [exp]	7.2	0.8272
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10018810 [exp]	7.3	0.8603
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10003972 [exp]	9.2	0.8569
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	9.4	0.8340
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10015738 [exp]	9.6	0.8621
AT3G13130			unknown protein		Lus10012341 [exp]	12.2	0.8526
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10030517 [exp]	12.6	0.8350
AT2G30630			P-loop containing nucleoside t...		Lus10021885 [exp]	13.7	0.8361
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10040414 [exp]	17.7	0.7632

Compare expression of checked genes

Lus10036591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.