Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57870 622 / 0 eIFiso4G1 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) AT2G24050 555 / 0 eIFiso4G2 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) AT4G30680 212 / 1e-63 Initiation factor eIF-4 gamma, MA3 (.1) AT1G62410 196 / 3e-58 MIF4G domain-containing protein (.1) AT3G60240 189 / 7e-50 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) AT1G56040 86 / 2e-17 HEAT/U-box domain-containing protein (.1) AT4G24800 66 / 9e-11 ECIP1 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) AT5G63190 63 / 4e-10 MA3 domain-containing protein (.1.2) AT3G48390 60 / 4e-09 MA3 domain-containing protein (.1) AT1G22730 52 / 1e-06 MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035813 [exp] 971 / 0 AT5G57870 654 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10022168 [exp] 741 / 0 AT5G57870 976 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10010782 [exp] 725 / 0 AT5G57870 952 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10035812 [exp] 340 / 6e-114 AT2G24050 228 / 3e-71 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10028156 [exp] 216 / 8e-59 AT3G60240 1275 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10042856 [exp] 215 / 2e-58 AT3G60240 970 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10036256 [exp] 163 / 2e-44 AT2G24050 145 / 3e-38 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10012205 [exp] 55 / 1e-07 AT1G22730 560 / 0.0 MA3 domain-containing protein (.1) Lus10011324 [exp] 54 / 3e-07 AT1G22730 816 / 0.0 MA3 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G104100 [exp] 741 / 0 AT5G57870 882 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G182100 [exp] 729 / 0 AT5G57870 884 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G265300 [exp] 642 / 0 AT5G57870 790 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.018G017600 [exp] 618 / 0 AT5G57870 809 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.014G052600 [exp] 208 / 3e-56 AT3G60240 998 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.002G140200 [exp] 201 / 6e-54 AT3G60240 942 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.012G091900 [exp] 58 / 2e-08 AT5G63190 1022 / 0.0 MA3 domain-containing protein (.1.2) Potri.015G088300 [exp] 57 / 3e-08 AT4G24800 1008 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Potri.005G199200 [exp] 54 / 5e-07 AT1G22730 828 / 0.0 MA3 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02854 [flax] [poplar] MIF4G MIF4G domain CL0020 [flax] [poplar] TPR PF02847 [flax] [poplar] MA3 MA3 domain
Representative CDS sequence Show only first row Show all	>Lus10036594 pacid=23174689 polypeptide=Lus10036594 locus=Lus10036594.g ID=Lus10036594.BGIv1.0 annot-version=v1.0 ATGCAGCAAGGTGATCAGACGGTGTTGAGCTTGAGGCCCGGCGGTGGTCGAGGAGGAGCTAGCACCAGACTCTTCAACCCACGTTCAGACTCTTCTCTTA TTGCTTCCAACAATAATCCCTCTGCTGCTACTGTTTCCTTTGGCGATCTCTCATTCCTCCGCCCTCATGGCGGCGCTTCTTCCCTAAAGTTTGGCAACTT GTATTTCGAGGGCCGTGAGCGGGTGAAATACACCCGGGAAGAACTATTGCAGATCAAAGAGGCTGTTGGTGTAATCTCGGACCAGATTCTGAATATCAAA CGGGAATTTGACACTGAGCTTTTTGGTGAAGATCAGAACTGGACGCGAGCAGAGAACAATCCACCAAATCAGCAGCCTCAAACTCGGTATTCTGAGCCAG ACAGTCGTGACTGGAGAACTCGTTCTACGCCAGTTTCTAGCCCTGCTCCTGCTTCGGCTCCAGGGGATGAGAGGTCTTGGGACTCCATTAGAGAAAGGGA TGGAAACCAATTCAATCGGCAAGATCAGCTTAATTCCCAATTTTTACGGGCACAAATATCTTCAAACCAATCGGGTGGTCCTCCTCCTGCGTTAGTCAAA GCTGAGGTGCCATGGTCAGTTAAGCGGGGCACTCTTTCTGATAAGGACCGTGTCTTAAAGACCGTTAAAGGTATTCTCAATAAGCTTACTCCAGAAAAGT TCGATCTTCTAAAAGGCCAGCTTATTGACTCGGGCATAACATCAGCTGATATTTTGAAGGGTGTGATCTCTCTCATATTTGAGAAAGCAGTGTTGGAACC AACTTTCTGTCCCATGTATTCACAGCTATGTTCTGATCTTAATGAAAAGCTTCCTCCGTTCCCATCAGATGAGACTGGTGGGAAGGAAGTCACATTTAAA AGAGTCCTCTTGAATAACTGCCAAGAGGCATTTGAAGGTGCTGATAAGTTGAGGGAAGAAGTGAGGCAAATGACAGCTCCAGATCAAGAGCTCGAGCGCA AGGATAAGGAAAGAATGGCGAAGCTTCGTACCCTGGGAAATATACGCTTGATTGGTGAGCTATTGAAGCAGAAGATGGTCCCTGAAAAAATTGTTCATCA CATTGTTCAGGAGCTGTTGGGCCCTGATAACAAGGTTTGTCCGGCAGAAGAAAATGTCGAAGCAATTTGTCAGTTTTTCATTACAATTGGCAAGCAACTT GATGAGAGCCCCAAGTCCCGATATATCAATGACGTATATTTTGGTCGTTTGAAAGAAGTGGCTTCAAATCCTCAGCTTGCTGCACGTTTGAGGTTTATGG TCAAAGATGTTCTTGACCTACGATCGAACAAATGGATTCCTAGGCGCGAGGAGGTCAAAGCTAAAACCATCACTGAGATTCATGCGGAAGCAGAAAAGAA TCTTGGGTTGCGACCAGGTGCAACTGCAAGTATACGAAACAACCGAGGTGCTGTTTCTGCTACTGTTGGACTCGTGCAAGGAATTGGCGGTTTAGCCCCT CCTCTTCGTGCTGAATCCCCTCTACCTGAAACAACTCCTGTTCCTCCAGCAGTTACCGAGAAGCTAGCTGGTGCTCCTCAAGCTGGAAAGATGAATGTCG ATGAACTCAAGAGGAAAACGGTCTCAATCTTGAAGGAGTACTTCAGCATTCGACTTGTGGATGAAGCATTCCAGTGCATTGAAGAACTCAAGTCTCCAGC ATATCACCCGGAAGTCATCAAGGAAGGCATTGCCCTTGGCCTGGAGGAAAACCCTCCTTGCGTGGAACCTGTCTTCAAGCTCCTCGAATACTTGTCAACC AAGAAAACTCTCACAGCTCGAGACATAACGACCGGGTGTATGCTCTACGCAACGATGCTGGATGACATTGGCATCGACTTGCCCAGAGCGCCCAACAACT TTGGCGAGATTGTCGGGAAACTGATCCTCTCCAGTCTACTGGAGTTCAAATCAGTTATGGAGATCCTAAAGAAGATGGAGGACGACATGTACCAGAAATC CGTGCTGGATGCAGCAGTAAGGATTGTGAAATCCAGCTCCGTTGGCCAAGGTATACTTGAATCCCAAGCTGCTGATATCGAGGCTTGCCAGAGTTTGTTC AAGTAG
AA sequence Show only first row Show all	>Lus10036594 pacid=23174689 polypeptide=Lus10036594 locus=Lus10036594.g ID=Lus10036594.BGIv1.0 annot-version=v1.0 MQQGDQTVLSLRPGGGRGGASTRLFNPRSDSSLIASNNNPSAATVSFGDLSFLRPHGGASSLKFGNLYFEGRERVKYTREELLQIKEAVGVISDQILNIK REFDTELFGEDQNWTRAENNPPNQQPQTRYSEPDSRDWRTRSTPVSSPAPASAPGDERSWDSIRERDGNQFNRQDQLNSQFLRAQISSNQSGGPPPALVK AEVPWSVKRGTLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFEKAVLEPTFCPMYSQLCSDLNEKLPPFPSDETGGKEVTFK RVLLNNCQEAFEGADKLREEVRQMTAPDQELERKDKERMAKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKVCPAEENVEAICQFFITIGKQL DESPKSRYINDVYFGRLKEVASNPQLAARLRFMVKDVLDLRSNKWIPRREEVKAKTITEIHAEAEKNLGLRPGATASIRNNRGAVSATVGLVQGIGGLAP PLRAESPLPETTPVPPAVTEKLAGAPQAGKMNVDELKRKTVSILKEYFSIRLVDEAFQCIEELKSPAYHPEVIKEGIALGLEENPPCVEPVFKLLEYLST KKTLTARDITTGCMLYATMLDDIGIDLPRAPNNFGEIVGKLILSSLLEFKSVMEILKKMEDDMYQKSVLDAAVRIVKSSSVGQGILESQAADIEACQSLF K

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10036594 [exp]	0	1
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10005063 [exp]	3.0	0.8540
AT2G29190		APUM2	pumilio 2 (.1.2)		Lus10040782 [exp]	6.6	0.8050
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10027835 [exp]	9.4	0.8264
AT5G65950			unknown protein		Lus10041289 [exp]	9.5	0.8544
AT5G53480			ARM repeat superfamily protein...		Lus10023247 [exp]	10.0	0.8644
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	10.4	0.8486
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10008681 [exp]	14.8	0.8463
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10035813 [exp]	15.4	0.8354
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10016850 [exp]	15.5	0.8124
AT5G47400			unknown protein		Lus10004740 [exp]	19.0	0.8090

Compare expression of checked genes

Lus10036594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.